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{ |
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"$schema": "https://raw.githubusercontent.com/martinring/tmlanguage/master/tmlanguage.json", |
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"name": "nextflow", |
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"scopeName": "source.nextflow", |
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"keyEquivalent": "^~N", |
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"patterns": [ |
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{ |
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"include": "#nfl-rules" |
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} |
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], |
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"repository": { |
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"nfl-rules": { |
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"patterns": [ |
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{ |
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"include": "#process-def" |
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{ |
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"include": "#workflow-def" |
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}, |
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{ |
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"include": "#code-block" |
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}, |
| 23 |
{ |
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"include": "#include-statement" |
| 25 |
}, |
| 26 |
{ |
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"include": "#implicit-variables" |
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}, |
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{ |
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"comment": "method call and parens", |
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"begin": "(\\w*\\()", |
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"beginCaptures": { |
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"1": { |
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"patterns": [ |
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{ |
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"include": "source.nextflow-groovy" |
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} |
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] |
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} |
| 40 |
}, |
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"end": "\\)", |
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"patterns": [ |
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{ |
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"include": "#nfl-rules" |
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} |
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] |
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}, |
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{ |
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"comment": "braces", |
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"begin": "{", |
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"end": "}", |
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"patterns": [ |
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{ |
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"include": "#nfl-rules" |
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} |
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] |
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}, |
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{ |
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"include": "source.nextflow-groovy" |
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} |
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] |
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}, |
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"process-def": { |
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"name": "process.nextflow", |
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"begin": "^\\s*(process)\\s+(\\w+|\"[^\"]+\"|'[^']+')\\s*{", |
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"beginCaptures": { |
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"1": { |
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"name": "keyword.nextflow" |
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"2": { |
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"name": "function.nextflow" |
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} |
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}, |
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"end": "}", |
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"patterns": [ |
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{ |
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"include": "#process-body" |
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} |
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] |
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"process-body": { |
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"patterns": [ |
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{ |
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"name": "entity.name.function.nextflow", |
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"match": "(?:accelerator|afterScript|beforeScript|cache|cpus|conda|container|containerOptions|clusterOptions|debug|disk|echo|errorStrategy|executor|ext|label|machineType|maxErrors|maxForks|maxRetries|memory|module|penv|pod|publishDir|queue|resourceLabels|scratch|stageInMode|stageOutMode|storeDir|tag|time)\\b" |
| 86 |
}, |
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{ |
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"name": "constant.block.nextflow", |
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"match": "(?:input|output|when|script|shell|exec):" |
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}, |
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{ |
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"name": "entity.name.function.nextflow", |
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"match": "\\b(tuple|set|path|file|val|stdout)(\\(|\\s)" |
| 94 |
}, |
| 95 |
{ |
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"include": "#implicit-variables" |
| 97 |
}, |
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{ |
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"comment": "method call and parens", |
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"begin": "(\\w*\\()", |
| 101 |
"beginCaptures": { |
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"1": { |
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"patterns": [ |
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{ |
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"include": "source.nextflow-groovy" |
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} |
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] |
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} |
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}, |
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"end": "\\)", |
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"patterns": [ |
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{ |
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"include": "#process-body" |
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} |
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] |
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}, |
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{ |
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"comment": "braces", |
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"begin": "{", |
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"end": "}", |
| 121 |
"patterns": [ |
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{ |
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"include": "#process-body" |
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} |
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] |
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}, |
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{ |
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"include": "source.nextflow-groovy#comments" |
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}, |
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{ |
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"include": "source.nextflow-groovy#support-functions" |
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}, |
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{ |
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"include": "source.nextflow-groovy#keyword" |
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}, |
| 136 |
{ |
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"include": "source.nextflow-groovy#values" |
| 138 |
}, |
| 139 |
{ |
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"include": "source.nextflow-groovy#anonymous-classes-and-new" |
| 141 |
}, |
| 142 |
{ |
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"include": "source.nextflow-groovy#types" |
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}, |
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{ |
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"include": "source.nextflow-groovy#parens" |
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}, |
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{ |
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"include": "source.nextflow-groovy#closures" |
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}, |
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{ |
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"include": "source.nextflow-groovy#braces" |
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} |
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] |
| 155 |
}, |
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"workflow-def": { |
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"name": "workflow.nextflow", |
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"begin": "^\\s*(workflow)(?:\\s+(\\w+|\"[^\"]+\"|'[^']+'))?\\s*{", |
| 159 |
"beginCaptures": { |
| 160 |
"1": { |
| 161 |
"name": "keyword.nextflow" |
| 162 |
}, |
| 163 |
"2": { |
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"name": "constant.nextflow" |
| 165 |
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| 166 |
}, |
| 167 |
"end": "}", |
| 168 |
"patterns": [ |
| 169 |
{ |
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"include": "#workflow-body" |
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} |
| 172 |
] |
| 173 |
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| 174 |
"workflow-body": { |
| 175 |
"patterns": [ |
| 176 |
{ |
| 177 |
"include": "#implicit-variables" |
| 178 |
}, |
| 179 |
{ |
| 180 |
"name": "constant.block.nextflow", |
| 181 |
"match": "(?:take|main|emit):" |
| 182 |
}, |
| 183 |
{ |
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"name": "entity.name.function.nextflow", |
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"match": "(?<=[\\s\\.])(branch|buffer|close|collate|collect|collectFile|combine|concat|count|countBy|cross|distinct|dump|filter|first|flatMap|flatten|groupTuple|ifEmpty|join|last|map|max|merge|min|mix|multiMap|randomSample|reduce|set|splitCsv|splitFasta|splitFastq|splitText|sum|take|tap|toInteger|toList|toSortedList|transpose|unique|until|view)(?=[{\\(\\s])" |
| 186 |
}, |
| 187 |
{ |
| 188 |
"comment": "Channel factory single line", |
| 189 |
"match": "\\b((?:C|c)hannel\\.)((fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?", |
| 190 |
"captures": { |
| 191 |
"1": { |
| 192 |
"name": "keyword.nextflow" |
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}, |
| 194 |
"2": { |
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"name": "entity.name.function.nextflow" |
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} |
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} |
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}, |
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{ |
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"comment": "Channel factory multi-line", |
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"begin": "\\b((?:C|c)hannel)\\s*$", |
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"beginCaptures": { |
| 203 |
"1": { |
| 204 |
"name": "keyword.nextflow" |
| 205 |
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| 207 |
"end": "(^\\s*)(?:(\\.)(fromList|fromPath|fromFilePairs|fromSRA|from|of|empty|value|watchPath)\\W)?", |
| 208 |
"endCaptures": { |
| 209 |
"1": { |
| 210 |
"name": "keyword.nextflow" |
| 211 |
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| 212 |
"2": { |
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"name": "keyword.nextflow" |
| 214 |
}, |
| 215 |
"3": { |
| 216 |
"name": "entity.name.function.nextflow" |
| 217 |
} |
| 218 |
} |
| 219 |
}, |
| 220 |
{ |
| 221 |
"comment": "method call and parens", |
| 222 |
"begin": "(\\w*\\()", |
| 223 |
"beginCaptures": { |
| 224 |
"1": { |
| 225 |
"patterns": [ |
| 226 |
{ |
| 227 |
"include": "source.nextflow-groovy" |
| 228 |
} |
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] |
| 230 |
} |
| 231 |
}, |
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"end": "\\)", |
| 233 |
"patterns": [ |
| 234 |
{ |
| 235 |
"include": "#workflow-body" |
| 236 |
} |
| 237 |
] |
| 238 |
}, |
| 239 |
{ |
| 240 |
"comment": "braces", |
| 241 |
"begin": "{", |
| 242 |
"end": "}", |
| 243 |
"patterns": [ |
| 244 |
{ |
| 245 |
"include": "#workflow-body" |
| 246 |
} |
| 247 |
] |
| 248 |
}, |
| 249 |
{ |
| 250 |
"include": "source.nextflow-groovy#comments" |
| 251 |
}, |
| 252 |
{ |
| 253 |
"include": "source.nextflow-groovy#support-functions" |
| 254 |
}, |
| 255 |
{ |
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"include": "source.nextflow-groovy#keyword" |
| 257 |
}, |
| 258 |
{ |
| 259 |
"include": "source.nextflow-groovy#values" |
| 260 |
}, |
| 261 |
{ |
| 262 |
"include": "source.nextflow-groovy#anonymous-classes-and-new" |
| 263 |
}, |
| 264 |
{ |
| 265 |
"include": "source.nextflow-groovy#types" |
| 266 |
}, |
| 267 |
{ |
| 268 |
"include": "source.nextflow-groovy#parens" |
| 269 |
}, |
| 270 |
{ |
| 271 |
"include": "source.nextflow-groovy#closures" |
| 272 |
}, |
| 273 |
{ |
| 274 |
"include": "source.nextflow-groovy#braces" |
| 275 |
} |
| 276 |
] |
| 277 |
}, |
| 278 |
"include-statement": { |
| 279 |
"patterns": [ |
| 280 |
{ |
| 281 |
"match": "^\\b(include)\\b", |
| 282 |
"name": "keyword.nextflow" |
| 283 |
}, |
| 284 |
{ |
| 285 |
"match": "\\b(from)\\b", |
| 286 |
"name": "keyword.nextflow" |
| 287 |
} |
| 288 |
] |
| 289 |
}, |
| 290 |
"implicit-variables": { |
| 291 |
"patterns": [ |
| 292 |
{ |
| 293 |
"match": "(?<=[^\\.\\w]|^)(params|nextflow|workflow|launchDir|moduleDir|projectDir|workDir)\\b", |
| 294 |
"name": "variable.language.nextflow" |
| 295 |
} |
| 296 |
] |
| 297 |
} |
| 298 |
} |
| 299 |
} |
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|
