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<?php |
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/* |
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* Copyright 2010 Google Inc. |
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* |
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* Licensed under the Apache License, Version 2.0 (the "License"); you may not |
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* use this file except in compliance with the License. You may obtain a copy of |
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* the License at |
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* |
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* http://www.apache.org/licenses/LICENSE-2.0 |
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* |
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* Unless required by applicable law or agreed to in writing, software |
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* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT |
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* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the |
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* License for the specific language governing permissions and limitations under |
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* the License. |
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*/ |
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|
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/** |
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* Service definition for Genomics (v1beta). |
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* |
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* <p> |
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* Provides access to Genomics data. |
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* </p> |
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* |
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* <p> |
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* For more information about this service, see the API |
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* <a href="https://developers.google.com/genomics/v1beta/reference" target="_blank">Documentation</a> |
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* </p> |
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* |
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* @author Google, Inc. |
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*/ |
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class Analytify_Google_Service_Genomics extends Analytify_Google_Service |
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{ |
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/** View and manage your data in Google BigQuery. */ |
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const BIGQUERY = "https://www.googleapis.com/auth/bigquery"; |
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/** Manage your data in Google Cloud Storage. */ |
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const DEVSTORAGE_READ_WRITE = "https://www.googleapis.com/auth/devstorage.read_write"; |
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/** View and manage Genomics data. */ |
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const GENOMICS = "https://www.googleapis.com/auth/genomics"; |
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/** View Genomics data. */ |
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const GENOMICS_READONLY = "https://www.googleapis.com/auth/genomics.readonly"; |
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|
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public $beacons; |
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public $callsets; |
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public $datasets; |
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public $experimental_jobs; |
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public $jobs; |
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public $reads; |
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public $readsets; |
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public $variants; |
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|
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|
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/** |
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* Constructs the internal representation of the Genomics service. |
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* |
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* @param Analytify_Google_Client $client |
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*/ |
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public function __construct(Analytify_Google_Client $client) |
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{ |
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parent::__construct($client); |
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$this->servicePath = 'genomics/v1beta/'; |
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$this->version = 'v1beta'; |
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$this->serviceName = 'genomics'; |
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|
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$this->beacons = new Analytify_Google_Service_Genomics_Beacons_Resource( |
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$this, |
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$this->serviceName, |
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'beacons', |
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array( |
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'methods' => array( |
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'get' => array( |
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'path' => 'beacons/{datasetId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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'allele' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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'contig' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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'position' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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), |
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), |
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) |
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) |
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); |
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$this->callsets = new Analytify_Google_Service_Genomics_Callsets_Resource( |
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$this, |
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$this->serviceName, |
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'callsets', |
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array( |
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'methods' => array( |
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'create' => array( |
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'path' => 'callsets', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'delete' => array( |
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'path' => 'callsets/{callsetId}', |
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'httpMethod' => 'DELETE', |
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'parameters' => array( |
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'callsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'get' => array( |
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'path' => 'callsets/{callsetId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'callsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'patch' => array( |
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'path' => 'callsets/{callsetId}', |
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'httpMethod' => 'PATCH', |
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'parameters' => array( |
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'callsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'search' => array( |
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'path' => 'callsets/search', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'update' => array( |
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'path' => 'callsets/{callsetId}', |
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'httpMethod' => 'PUT', |
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'parameters' => array( |
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'callsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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), |
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) |
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) |
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); |
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$this->datasets = new Analytify_Google_Service_Genomics_Datasets_Resource( |
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$this, |
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$this->serviceName, |
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'datasets', |
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array( |
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'methods' => array( |
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'create' => array( |
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'path' => 'datasets', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'delete' => array( |
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'path' => 'datasets/{datasetId}', |
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'httpMethod' => 'DELETE', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'get' => array( |
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'path' => 'datasets/{datasetId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'list' => array( |
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'path' => 'datasets', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'pageToken' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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'maxResults' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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'projectId' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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), |
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),'patch' => array( |
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'path' => 'datasets/{datasetId}', |
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'httpMethod' => 'PATCH', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'undelete' => array( |
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'path' => 'datasets/{datasetId}/undelete', |
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'httpMethod' => 'POST', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'update' => array( |
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'path' => 'datasets/{datasetId}', |
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'httpMethod' => 'PUT', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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), |
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) |
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) |
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); |
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$this->experimental_jobs = new Analytify_Google_Service_Genomics_ExperimentalJobs_Resource( |
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$this, |
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$this->serviceName, |
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'jobs', |
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array( |
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'methods' => array( |
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'create' => array( |
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'path' => 'experimental/jobs/create', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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), |
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) |
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) |
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); |
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$this->jobs = new Analytify_Google_Service_Genomics_Jobs_Resource( |
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$this, |
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$this->serviceName, |
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'jobs', |
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array( |
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'methods' => array( |
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'cancel' => array( |
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'path' => 'jobs/{jobId}/cancel', |
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'httpMethod' => 'POST', |
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'parameters' => array( |
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'jobId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'get' => array( |
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'path' => 'jobs/{jobId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'jobId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'search' => array( |
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'path' => 'jobs/search', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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), |
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) |
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) |
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); |
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$this->reads = new Analytify_Google_Service_Genomics_Reads_Resource( |
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$this, |
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$this->serviceName, |
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'reads', |
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array( |
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'methods' => array( |
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'search' => array( |
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'path' => 'reads/search', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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), |
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) |
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) |
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); |
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$this->readsets = new Analytify_Google_Service_Genomics_Readsets_Resource( |
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$this, |
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$this->serviceName, |
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'readsets', |
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array( |
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'methods' => array( |
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'delete' => array( |
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'path' => 'readsets/{readsetId}', |
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'httpMethod' => 'DELETE', |
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'parameters' => array( |
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'readsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'export' => array( |
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'path' => 'readsets/export', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'get' => array( |
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'path' => 'readsets/{readsetId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'readsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'import' => array( |
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'path' => 'readsets/import', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'patch' => array( |
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'path' => 'readsets/{readsetId}', |
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'httpMethod' => 'PATCH', |
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'parameters' => array( |
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'readsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'search' => array( |
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'path' => 'readsets/search', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'update' => array( |
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'path' => 'readsets/{readsetId}', |
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'httpMethod' => 'PUT', |
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'parameters' => array( |
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'readsetId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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), |
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) |
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) |
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); |
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$this->variants = new Analytify_Google_Service_Genomics_Variants_Resource( |
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$this, |
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$this->serviceName, |
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'variants', |
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array( |
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'methods' => array( |
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'create' => array( |
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'path' => 'variants', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'delete' => array( |
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'path' => 'variants/{variantId}', |
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'httpMethod' => 'DELETE', |
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'parameters' => array( |
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'variantId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'export' => array( |
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'path' => 'variants/export', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'get' => array( |
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'path' => 'variants/{variantId}', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'variantId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'getSummary' => array( |
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'path' => 'variants/summary', |
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'httpMethod' => 'GET', |
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'parameters' => array( |
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'datasetId' => array( |
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'location' => 'query', |
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'type' => 'string', |
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), |
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), |
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),'import' => array( |
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'path' => 'variants/import', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'patch' => array( |
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'path' => 'variants/{variantId}', |
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'httpMethod' => 'PATCH', |
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'parameters' => array( |
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'variantId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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),'search' => array( |
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'path' => 'variants/search', |
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'httpMethod' => 'POST', |
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'parameters' => array(), |
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),'update' => array( |
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'path' => 'variants/{variantId}', |
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'httpMethod' => 'PUT', |
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'parameters' => array( |
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'variantId' => array( |
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'location' => 'path', |
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'type' => 'string', |
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'required' => true, |
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), |
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), |
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), |
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) |
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) |
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); |
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} |
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} |
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|
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|
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/** |
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* The "beacons" collection of methods. |
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* Typical usage is: |
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* <code> |
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* $genomicsService = new Analytify_Google_Service_Genomics(...); |
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* $beacons = $genomicsService->beacons; |
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* </code> |
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*/ |
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class Analytify_Google_Service_Genomics_Beacons_Resource extends Analytify_Google_Service_Resource |
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{ |
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|
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/** |
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* This is an experimental API that provides a Global Alliance for Genomics and |
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* Health Beacon. It may change at any time. (beacons.get) |
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* |
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* @param string $datasetId |
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* The ID of the dataset to query over. It must be public. Private datasets will return an |
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* unauthorized exception. |
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* @param array $optParams Optional parameters. |
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* |
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* @opt_param string allele |
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* Required. The allele to look for ('A', 'C', 'G' or 'T'). |
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* @opt_param string contig |
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* Required. The contig to query over. |
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* @opt_param string position |
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* Required. The 1-based position to query at. |
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* @return Analytify_Google_Service_Genomics_Beacon |
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*/ |
| 467 |
public function get($datasetId, $optParams = array()) |
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{ |
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$params = array('datasetId' => $datasetId); |
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$params = array_merge($params, $optParams); |
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return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Beacon"); |
| 472 |
} |
| 473 |
} |
| 474 |
|
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/** |
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* The "callsets" collection of methods. |
| 477 |
* Typical usage is: |
| 478 |
* <code> |
| 479 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 480 |
* $callsets = $genomicsService->callsets; |
| 481 |
* </code> |
| 482 |
*/ |
| 483 |
class Analytify_Google_Service_Genomics_Callsets_Resource extends Analytify_Google_Service_Resource |
| 484 |
{ |
| 485 |
|
| 486 |
/** |
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* Creates a new callset. (callsets.create) |
| 488 |
* |
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* @param Analytify_Google_Callset $postBody |
| 490 |
* @param array $optParams Optional parameters. |
| 491 |
* @return Analytify_Google_Service_Genomics_Callset |
| 492 |
*/ |
| 493 |
public function create(Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array()) |
| 494 |
{ |
| 495 |
$params = array('postBody' => $postBody); |
| 496 |
$params = array_merge($params, $optParams); |
| 497 |
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Callset"); |
| 498 |
} |
| 499 |
/** |
| 500 |
* Deletes a callset. (callsets.delete) |
| 501 |
* |
| 502 |
* @param string $callsetId |
| 503 |
* The ID of the callset to be deleted. |
| 504 |
* @param array $optParams Optional parameters. |
| 505 |
*/ |
| 506 |
public function delete($callsetId, $optParams = array()) |
| 507 |
{ |
| 508 |
$params = array('callsetId' => $callsetId); |
| 509 |
$params = array_merge($params, $optParams); |
| 510 |
return $this->call('delete', array($params)); |
| 511 |
} |
| 512 |
/** |
| 513 |
* Gets a callset by ID. (callsets.get) |
| 514 |
* |
| 515 |
* @param string $callsetId |
| 516 |
* The ID of the callset. |
| 517 |
* @param array $optParams Optional parameters. |
| 518 |
* @return Analytify_Google_Service_Genomics_Callset |
| 519 |
*/ |
| 520 |
public function get($callsetId, $optParams = array()) |
| 521 |
{ |
| 522 |
$params = array('callsetId' => $callsetId); |
| 523 |
$params = array_merge($params, $optParams); |
| 524 |
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Callset"); |
| 525 |
} |
| 526 |
/** |
| 527 |
* Updates a callset. This method supports patch semantics. (callsets.patch) |
| 528 |
* |
| 529 |
* @param string $callsetId |
| 530 |
* The ID of the callset to be updated. |
| 531 |
* @param Analytify_Google_Callset $postBody |
| 532 |
* @param array $optParams Optional parameters. |
| 533 |
* @return Analytify_Google_Service_Genomics_Callset |
| 534 |
*/ |
| 535 |
public function patch($callsetId, Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array()) |
| 536 |
{ |
| 537 |
$params = array('callsetId' => $callsetId, 'postBody' => $postBody); |
| 538 |
$params = array_merge($params, $optParams); |
| 539 |
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Callset"); |
| 540 |
} |
| 541 |
/** |
| 542 |
* Gets a list of callsets matching the criteria. (callsets.search) |
| 543 |
* |
| 544 |
* @param Analytify_Google_SearchCallsetsRequest $postBody |
| 545 |
* @param array $optParams Optional parameters. |
| 546 |
* @return Analytify_Google_Service_Genomics_SearchCallsetsResponse |
| 547 |
*/ |
| 548 |
public function search(Analytify_Google_Service_Genomics_SearchCallsetsRequest $postBody, $optParams = array()) |
| 549 |
{ |
| 550 |
$params = array('postBody' => $postBody); |
| 551 |
$params = array_merge($params, $optParams); |
| 552 |
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchCallsetsResponse"); |
| 553 |
} |
| 554 |
/** |
| 555 |
* Updates a callset. (callsets.update) |
| 556 |
* |
| 557 |
* @param string $callsetId |
| 558 |
* The ID of the callset to be updated. |
| 559 |
* @param Analytify_Google_Callset $postBody |
| 560 |
* @param array $optParams Optional parameters. |
| 561 |
* @return Analytify_Google_Service_Genomics_Callset |
| 562 |
*/ |
| 563 |
public function update($callsetId, Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array()) |
| 564 |
{ |
| 565 |
$params = array('callsetId' => $callsetId, 'postBody' => $postBody); |
| 566 |
$params = array_merge($params, $optParams); |
| 567 |
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Callset"); |
| 568 |
} |
| 569 |
} |
| 570 |
|
| 571 |
/** |
| 572 |
* The "datasets" collection of methods. |
| 573 |
* Typical usage is: |
| 574 |
* <code> |
| 575 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 576 |
* $datasets = $genomicsService->datasets; |
| 577 |
* </code> |
| 578 |
*/ |
| 579 |
class Analytify_Google_Service_Genomics_Datasets_Resource extends Analytify_Google_Service_Resource |
| 580 |
{ |
| 581 |
|
| 582 |
/** |
| 583 |
* Creates a new dataset. (datasets.create) |
| 584 |
* |
| 585 |
* @param Analytify_Google_Dataset $postBody |
| 586 |
* @param array $optParams Optional parameters. |
| 587 |
* @return Analytify_Google_Service_Genomics_Dataset |
| 588 |
*/ |
| 589 |
public function create(Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array()) |
| 590 |
{ |
| 591 |
$params = array('postBody' => $postBody); |
| 592 |
$params = array_merge($params, $optParams); |
| 593 |
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Dataset"); |
| 594 |
} |
| 595 |
/** |
| 596 |
* Deletes a dataset. (datasets.delete) |
| 597 |
* |
| 598 |
* @param string $datasetId |
| 599 |
* The ID of the dataset to be deleted. |
| 600 |
* @param array $optParams Optional parameters. |
| 601 |
*/ |
| 602 |
public function delete($datasetId, $optParams = array()) |
| 603 |
{ |
| 604 |
$params = array('datasetId' => $datasetId); |
| 605 |
$params = array_merge($params, $optParams); |
| 606 |
return $this->call('delete', array($params)); |
| 607 |
} |
| 608 |
/** |
| 609 |
* Gets a dataset by ID. (datasets.get) |
| 610 |
* |
| 611 |
* @param string $datasetId |
| 612 |
* The ID of the dataset. |
| 613 |
* @param array $optParams Optional parameters. |
| 614 |
* @return Analytify_Google_Service_Genomics_Dataset |
| 615 |
*/ |
| 616 |
public function get($datasetId, $optParams = array()) |
| 617 |
{ |
| 618 |
$params = array('datasetId' => $datasetId); |
| 619 |
$params = array_merge($params, $optParams); |
| 620 |
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Dataset"); |
| 621 |
} |
| 622 |
/** |
| 623 |
* Lists all datasets. (datasets.listDatasets) |
| 624 |
* |
| 625 |
* @param array $optParams Optional parameters. |
| 626 |
* |
| 627 |
* @opt_param string pageToken |
| 628 |
* The continuation token, which is used to page through large result sets. To get the next page of |
| 629 |
* results, set this parameter to the value of "nextPageToken" from the previous response. |
| 630 |
* @opt_param string maxResults |
| 631 |
* The maximum number of results returned by this request. |
| 632 |
* @opt_param string projectId |
| 633 |
* Only return datasets which belong to this Google Developers Console project. Only accepts |
| 634 |
* project numbers. |
| 635 |
* @return Analytify_Google_Service_Genomics_ListDatasetsResponse |
| 636 |
*/ |
| 637 |
public function listDatasets($optParams = array()) |
| 638 |
{ |
| 639 |
$params = array(); |
| 640 |
$params = array_merge($params, $optParams); |
| 641 |
return $this->call('list', array($params), "Analytify_Google_Service_Genomics_ListDatasetsResponse"); |
| 642 |
} |
| 643 |
/** |
| 644 |
* Updates a dataset. This method supports patch semantics. (datasets.patch) |
| 645 |
* |
| 646 |
* @param string $datasetId |
| 647 |
* The ID of the dataset to be updated. |
| 648 |
* @param Analytify_Google_Dataset $postBody |
| 649 |
* @param array $optParams Optional parameters. |
| 650 |
* @return Analytify_Google_Service_Genomics_Dataset |
| 651 |
*/ |
| 652 |
public function patch($datasetId, Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array()) |
| 653 |
{ |
| 654 |
$params = array('datasetId' => $datasetId, 'postBody' => $postBody); |
| 655 |
$params = array_merge($params, $optParams); |
| 656 |
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Dataset"); |
| 657 |
} |
| 658 |
/** |
| 659 |
* Undeletes a dataset by restoring a dataset which was deleted via this API. |
| 660 |
* This operation is only possible for a week after the deletion occurred. |
| 661 |
* (datasets.undelete) |
| 662 |
* |
| 663 |
* @param string $datasetId |
| 664 |
* The ID of the dataset to be undeleted. |
| 665 |
* @param array $optParams Optional parameters. |
| 666 |
* @return Analytify_Google_Service_Genomics_Dataset |
| 667 |
*/ |
| 668 |
public function undelete($datasetId, $optParams = array()) |
| 669 |
{ |
| 670 |
$params = array('datasetId' => $datasetId); |
| 671 |
$params = array_merge($params, $optParams); |
| 672 |
return $this->call('undelete', array($params), "Analytify_Google_Service_Genomics_Dataset"); |
| 673 |
} |
| 674 |
/** |
| 675 |
* Updates a dataset. (datasets.update) |
| 676 |
* |
| 677 |
* @param string $datasetId |
| 678 |
* The ID of the dataset to be updated. |
| 679 |
* @param Analytify_Google_Dataset $postBody |
| 680 |
* @param array $optParams Optional parameters. |
| 681 |
* @return Analytify_Google_Service_Genomics_Dataset |
| 682 |
*/ |
| 683 |
public function update($datasetId, Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array()) |
| 684 |
{ |
| 685 |
$params = array('datasetId' => $datasetId, 'postBody' => $postBody); |
| 686 |
$params = array_merge($params, $optParams); |
| 687 |
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Dataset"); |
| 688 |
} |
| 689 |
} |
| 690 |
|
| 691 |
/** |
| 692 |
* The "experimental" collection of methods. |
| 693 |
* Typical usage is: |
| 694 |
* <code> |
| 695 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 696 |
* $experimental = $genomicsService->experimental; |
| 697 |
* </code> |
| 698 |
*/ |
| 699 |
class Analytify_Google_Service_Genomics_Experimental_Resource extends Analytify_Google_Service_Resource |
| 700 |
{ |
| 701 |
|
| 702 |
} |
| 703 |
|
| 704 |
/** |
| 705 |
* The "jobs" collection of methods. |
| 706 |
* Typical usage is: |
| 707 |
* <code> |
| 708 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 709 |
* $jobs = $genomicsService->jobs; |
| 710 |
* </code> |
| 711 |
*/ |
| 712 |
class Analytify_Google_Service_Genomics_ExperimentalJobs_Resource extends Analytify_Google_Service_Resource |
| 713 |
{ |
| 714 |
|
| 715 |
/** |
| 716 |
* Creates and asynchronously runs an ad-hoc job. This is an experimental call |
| 717 |
* and may be removed or changed at any time. (jobs.create) |
| 718 |
* |
| 719 |
* @param Analytify_Google_ExperimentalCreateJobRequest $postBody |
| 720 |
* @param array $optParams Optional parameters. |
| 721 |
* @return Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse |
| 722 |
*/ |
| 723 |
public function create(Analytify_Google_Service_Genomics_ExperimentalCreateJobRequest $postBody, $optParams = array()) |
| 724 |
{ |
| 725 |
$params = array('postBody' => $postBody); |
| 726 |
$params = array_merge($params, $optParams); |
| 727 |
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse"); |
| 728 |
} |
| 729 |
} |
| 730 |
|
| 731 |
/** |
| 732 |
* The "jobs" collection of methods. |
| 733 |
* Typical usage is: |
| 734 |
* <code> |
| 735 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 736 |
* $jobs = $genomicsService->jobs; |
| 737 |
* </code> |
| 738 |
*/ |
| 739 |
class Analytify_Google_Service_Genomics_Jobs_Resource extends Analytify_Google_Service_Resource |
| 740 |
{ |
| 741 |
|
| 742 |
/** |
| 743 |
* Cancels a job by ID. Note that it is possible for partial results to be |
| 744 |
* generated and stored for cancelled jobs. (jobs.cancel) |
| 745 |
* |
| 746 |
* @param string $jobId |
| 747 |
* Required. The ID of the job. |
| 748 |
* @param array $optParams Optional parameters. |
| 749 |
*/ |
| 750 |
public function cancel($jobId, $optParams = array()) |
| 751 |
{ |
| 752 |
$params = array('jobId' => $jobId); |
| 753 |
$params = array_merge($params, $optParams); |
| 754 |
return $this->call('cancel', array($params)); |
| 755 |
} |
| 756 |
/** |
| 757 |
* Gets a job by ID. (jobs.get) |
| 758 |
* |
| 759 |
* @param string $jobId |
| 760 |
* Required. The ID of the job. |
| 761 |
* @param array $optParams Optional parameters. |
| 762 |
* @return Analytify_Google_Service_Genomics_Job |
| 763 |
*/ |
| 764 |
public function get($jobId, $optParams = array()) |
| 765 |
{ |
| 766 |
$params = array('jobId' => $jobId); |
| 767 |
$params = array_merge($params, $optParams); |
| 768 |
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Job"); |
| 769 |
} |
| 770 |
/** |
| 771 |
* Gets a list of jobs matching the criteria. (jobs.search) |
| 772 |
* |
| 773 |
* @param Analytify_Google_SearchJobsRequest $postBody |
| 774 |
* @param array $optParams Optional parameters. |
| 775 |
* @return Analytify_Google_Service_Genomics_SearchJobsResponse |
| 776 |
*/ |
| 777 |
public function search(Analytify_Google_Service_Genomics_SearchJobsRequest $postBody, $optParams = array()) |
| 778 |
{ |
| 779 |
$params = array('postBody' => $postBody); |
| 780 |
$params = array_merge($params, $optParams); |
| 781 |
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchJobsResponse"); |
| 782 |
} |
| 783 |
} |
| 784 |
|
| 785 |
/** |
| 786 |
* The "reads" collection of methods. |
| 787 |
* Typical usage is: |
| 788 |
* <code> |
| 789 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 790 |
* $reads = $genomicsService->reads; |
| 791 |
* </code> |
| 792 |
*/ |
| 793 |
class Analytify_Google_Service_Genomics_Reads_Resource extends Analytify_Google_Service_Resource |
| 794 |
{ |
| 795 |
|
| 796 |
/** |
| 797 |
* Gets a list of reads for one or more readsets. Reads search operates over a |
| 798 |
* genomic coordinate space of reference sequence & position defined over the |
| 799 |
* reference sequences to which the requested readsets are aligned. If a target |
| 800 |
* positional range is specified, search returns all reads whose alignment to |
| 801 |
* the reference genome overlap the range. A query which specifies only readset |
| 802 |
* IDs yields all reads in those readsets, including unmapped reads. All reads |
| 803 |
* returned (including reads on subsequent pages) are ordered by genomic |
| 804 |
* coordinate (reference sequence & position). Reads with equivalent genomic |
| 805 |
* coordinates are returned in a deterministic order. (reads.search) |
| 806 |
* |
| 807 |
* @param Analytify_Google_SearchReadsRequest $postBody |
| 808 |
* @param array $optParams Optional parameters. |
| 809 |
* @return Analytify_Google_Service_Genomics_SearchReadsResponse |
| 810 |
*/ |
| 811 |
public function search(Analytify_Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array()) |
| 812 |
{ |
| 813 |
$params = array('postBody' => $postBody); |
| 814 |
$params = array_merge($params, $optParams); |
| 815 |
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchReadsResponse"); |
| 816 |
} |
| 817 |
} |
| 818 |
|
| 819 |
/** |
| 820 |
* The "readsets" collection of methods. |
| 821 |
* Typical usage is: |
| 822 |
* <code> |
| 823 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 824 |
* $readsets = $genomicsService->readsets; |
| 825 |
* </code> |
| 826 |
*/ |
| 827 |
class Analytify_Google_Service_Genomics_Readsets_Resource extends Analytify_Google_Service_Resource |
| 828 |
{ |
| 829 |
|
| 830 |
/** |
| 831 |
* Deletes a readset. (readsets.delete) |
| 832 |
* |
| 833 |
* @param string $readsetId |
| 834 |
* The ID of the readset to be deleted. The caller must have WRITE permissions to the dataset |
| 835 |
* associated with this readset. |
| 836 |
* @param array $optParams Optional parameters. |
| 837 |
*/ |
| 838 |
public function delete($readsetId, $optParams = array()) |
| 839 |
{ |
| 840 |
$params = array('readsetId' => $readsetId); |
| 841 |
$params = array_merge($params, $optParams); |
| 842 |
return $this->call('delete', array($params)); |
| 843 |
} |
| 844 |
/** |
| 845 |
* Exports readsets to a BAM file in Google Cloud Storage. Note that currently |
| 846 |
* there may be some differences between exported BAM files and the original BAM |
| 847 |
* file at the time of import. In particular, comments in the input file header |
| 848 |
* will not be preserved, and some custom tags will be converted to strings. |
| 849 |
* (readsets.export) |
| 850 |
* |
| 851 |
* @param Analytify_Google_ExportReadsetsRequest $postBody |
| 852 |
* @param array $optParams Optional parameters. |
| 853 |
* @return Analytify_Google_Service_Genomics_ExportReadsetsResponse |
| 854 |
*/ |
| 855 |
public function export(Analytify_Google_Service_Genomics_ExportReadsetsRequest $postBody, $optParams = array()) |
| 856 |
{ |
| 857 |
$params = array('postBody' => $postBody); |
| 858 |
$params = array_merge($params, $optParams); |
| 859 |
return $this->call('export', array($params), "Analytify_Google_Service_Genomics_ExportReadsetsResponse"); |
| 860 |
} |
| 861 |
/** |
| 862 |
* Gets a readset by ID. (readsets.get) |
| 863 |
* |
| 864 |
* @param string $readsetId |
| 865 |
* The ID of the readset. |
| 866 |
* @param array $optParams Optional parameters. |
| 867 |
* @return Analytify_Google_Service_Genomics_Readset |
| 868 |
*/ |
| 869 |
public function get($readsetId, $optParams = array()) |
| 870 |
{ |
| 871 |
$params = array('readsetId' => $readsetId); |
| 872 |
$params = array_merge($params, $optParams); |
| 873 |
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Readset"); |
| 874 |
} |
| 875 |
/** |
| 876 |
* Creates readsets by asynchronously importing the provided information. Note |
| 877 |
* that currently comments in the input file header are not imported and some |
| 878 |
* custom tags will be converted to strings, rather than preserving tag types. |
| 879 |
* The caller must have WRITE permissions to the dataset. (readsets.import) |
| 880 |
* |
| 881 |
* @param Analytify_Google_ImportReadsetsRequest $postBody |
| 882 |
* @param array $optParams Optional parameters. |
| 883 |
* @return Analytify_Google_Service_Genomics_ImportReadsetsResponse |
| 884 |
*/ |
| 885 |
public function import(Analytify_Google_Service_Genomics_ImportReadsetsRequest $postBody, $optParams = array()) |
| 886 |
{ |
| 887 |
$params = array('postBody' => $postBody); |
| 888 |
$params = array_merge($params, $optParams); |
| 889 |
return $this->call('import', array($params), "Analytify_Google_Service_Genomics_ImportReadsetsResponse"); |
| 890 |
} |
| 891 |
/** |
| 892 |
* Updates a readset. This method supports patch semantics. (readsets.patch) |
| 893 |
* |
| 894 |
* @param string $readsetId |
| 895 |
* The ID of the readset to be updated. The caller must have WRITE permissions to the dataset |
| 896 |
* associated with this readset. |
| 897 |
* @param Analytify_Google_Readset $postBody |
| 898 |
* @param array $optParams Optional parameters. |
| 899 |
* @return Analytify_Google_Service_Genomics_Readset |
| 900 |
*/ |
| 901 |
public function patch($readsetId, Analytify_Google_Service_Genomics_Readset $postBody, $optParams = array()) |
| 902 |
{ |
| 903 |
$params = array('readsetId' => $readsetId, 'postBody' => $postBody); |
| 904 |
$params = array_merge($params, $optParams); |
| 905 |
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Readset"); |
| 906 |
} |
| 907 |
/** |
| 908 |
* Gets a list of readsets matching the criteria. (readsets.search) |
| 909 |
* |
| 910 |
* @param Analytify_Google_SearchReadsetsRequest $postBody |
| 911 |
* @param array $optParams Optional parameters. |
| 912 |
* @return Analytify_Google_Service_Genomics_SearchReadsetsResponse |
| 913 |
*/ |
| 914 |
public function search(Analytify_Google_Service_Genomics_SearchReadsetsRequest $postBody, $optParams = array()) |
| 915 |
{ |
| 916 |
$params = array('postBody' => $postBody); |
| 917 |
$params = array_merge($params, $optParams); |
| 918 |
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchReadsetsResponse"); |
| 919 |
} |
| 920 |
/** |
| 921 |
* Updates a readset. (readsets.update) |
| 922 |
* |
| 923 |
* @param string $readsetId |
| 924 |
* The ID of the readset to be updated. The caller must have WRITE permissions to the dataset |
| 925 |
* associated with this readset. |
| 926 |
* @param Analytify_Google_Readset $postBody |
| 927 |
* @param array $optParams Optional parameters. |
| 928 |
* @return Analytify_Google_Service_Genomics_Readset |
| 929 |
*/ |
| 930 |
public function update($readsetId, Analytify_Google_Service_Genomics_Readset $postBody, $optParams = array()) |
| 931 |
{ |
| 932 |
$params = array('readsetId' => $readsetId, 'postBody' => $postBody); |
| 933 |
$params = array_merge($params, $optParams); |
| 934 |
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Readset"); |
| 935 |
} |
| 936 |
} |
| 937 |
|
| 938 |
/** |
| 939 |
* The "variants" collection of methods. |
| 940 |
* Typical usage is: |
| 941 |
* <code> |
| 942 |
* $genomicsService = new Analytify_Google_Service_Genomics(...); |
| 943 |
* $variants = $genomicsService->variants; |
| 944 |
* </code> |
| 945 |
*/ |
| 946 |
class Analytify_Google_Service_Genomics_Variants_Resource extends Analytify_Google_Service_Resource |
| 947 |
{ |
| 948 |
|
| 949 |
/** |
| 950 |
* Creates a new variant. (variants.create) |
| 951 |
* |
| 952 |
* @param Analytify_Google_Variant $postBody |
| 953 |
* @param array $optParams Optional parameters. |
| 954 |
* @return Analytify_Google_Service_Genomics_Variant |
| 955 |
*/ |
| 956 |
public function create(Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array()) |
| 957 |
{ |
| 958 |
$params = array('postBody' => $postBody); |
| 959 |
$params = array_merge($params, $optParams); |
| 960 |
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Variant"); |
| 961 |
} |
| 962 |
/** |
| 963 |
* Deletes a variant. (variants.delete) |
| 964 |
* |
| 965 |
* @param string $variantId |
| 966 |
* The ID of the variant to be deleted. |
| 967 |
* @param array $optParams Optional parameters. |
| 968 |
*/ |
| 969 |
public function delete($variantId, $optParams = array()) |
| 970 |
{ |
| 971 |
$params = array('variantId' => $variantId); |
| 972 |
$params = array_merge($params, $optParams); |
| 973 |
return $this->call('delete', array($params)); |
| 974 |
} |
| 975 |
/** |
| 976 |
* Exports variant data to an external destination. (variants.export) |
| 977 |
* |
| 978 |
* @param Analytify_Google_ExportVariantsRequest $postBody |
| 979 |
* @param array $optParams Optional parameters. |
| 980 |
* @return Analytify_Google_Service_Genomics_ExportVariantsResponse |
| 981 |
*/ |
| 982 |
public function export(Analytify_Google_Service_Genomics_ExportVariantsRequest $postBody, $optParams = array()) |
| 983 |
{ |
| 984 |
$params = array('postBody' => $postBody); |
| 985 |
$params = array_merge($params, $optParams); |
| 986 |
return $this->call('export', array($params), "Analytify_Google_Service_Genomics_ExportVariantsResponse"); |
| 987 |
} |
| 988 |
/** |
| 989 |
* Gets a variant by ID. (variants.get) |
| 990 |
* |
| 991 |
* @param string $variantId |
| 992 |
* The ID of the variant. |
| 993 |
* @param array $optParams Optional parameters. |
| 994 |
* @return Analytify_Google_Service_Genomics_Variant |
| 995 |
*/ |
| 996 |
public function get($variantId, $optParams = array()) |
| 997 |
{ |
| 998 |
$params = array('variantId' => $variantId); |
| 999 |
$params = array_merge($params, $optParams); |
| 1000 |
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Variant"); |
| 1001 |
} |
| 1002 |
/** |
| 1003 |
* Gets a summary of all the variant data in a dataset. (variants.getSummary) |
| 1004 |
* |
| 1005 |
* @param array $optParams Optional parameters. |
| 1006 |
* |
| 1007 |
* @opt_param string datasetId |
| 1008 |
* Required. The ID of the dataset to get variant summary information for. |
| 1009 |
* @return Analytify_Google_Service_Genomics_GetVariantsSummaryResponse |
| 1010 |
*/ |
| 1011 |
public function getSummary($optParams = array()) |
| 1012 |
{ |
| 1013 |
$params = array(); |
| 1014 |
$params = array_merge($params, $optParams); |
| 1015 |
return $this->call('getSummary', array($params), "Analytify_Google_Service_Genomics_GetVariantsSummaryResponse"); |
| 1016 |
} |
| 1017 |
/** |
| 1018 |
* Creates variant data by asynchronously importing the provided information. |
| 1019 |
* (variants.import) |
| 1020 |
* |
| 1021 |
* @param Analytify_Google_ImportVariantsRequest $postBody |
| 1022 |
* @param array $optParams Optional parameters. |
| 1023 |
* @return Analytify_Google_Service_Genomics_ImportVariantsResponse |
| 1024 |
*/ |
| 1025 |
public function import(Analytify_Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array()) |
| 1026 |
{ |
| 1027 |
$params = array('postBody' => $postBody); |
| 1028 |
$params = array_merge($params, $optParams); |
| 1029 |
return $this->call('import', array($params), "Analytify_Google_Service_Genomics_ImportVariantsResponse"); |
| 1030 |
} |
| 1031 |
/** |
| 1032 |
* Updates a variant. This method supports patch semantics. (variants.patch) |
| 1033 |
* |
| 1034 |
* @param string $variantId |
| 1035 |
* The ID of the variant to be updated.. |
| 1036 |
* @param Analytify_Google_Variant $postBody |
| 1037 |
* @param array $optParams Optional parameters. |
| 1038 |
* @return Analytify_Google_Service_Genomics_Variant |
| 1039 |
*/ |
| 1040 |
public function patch($variantId, Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array()) |
| 1041 |
{ |
| 1042 |
$params = array('variantId' => $variantId, 'postBody' => $postBody); |
| 1043 |
$params = array_merge($params, $optParams); |
| 1044 |
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Variant"); |
| 1045 |
} |
| 1046 |
/** |
| 1047 |
* Gets a list of variants matching the criteria. (variants.search) |
| 1048 |
* |
| 1049 |
* @param Analytify_Google_SearchVariantsRequest $postBody |
| 1050 |
* @param array $optParams Optional parameters. |
| 1051 |
* @return Analytify_Google_Service_Genomics_SearchVariantsResponse |
| 1052 |
*/ |
| 1053 |
public function search(Analytify_Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array()) |
| 1054 |
{ |
| 1055 |
$params = array('postBody' => $postBody); |
| 1056 |
$params = array_merge($params, $optParams); |
| 1057 |
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchVariantsResponse"); |
| 1058 |
} |
| 1059 |
/** |
| 1060 |
* Updates a variant. (variants.update) |
| 1061 |
* |
| 1062 |
* @param string $variantId |
| 1063 |
* The ID of the variant to be updated.. |
| 1064 |
* @param Analytify_Google_Variant $postBody |
| 1065 |
* @param array $optParams Optional parameters. |
| 1066 |
* @return Analytify_Google_Service_Genomics_Variant |
| 1067 |
*/ |
| 1068 |
public function update($variantId, Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array()) |
| 1069 |
{ |
| 1070 |
$params = array('variantId' => $variantId, 'postBody' => $postBody); |
| 1071 |
$params = array_merge($params, $optParams); |
| 1072 |
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Variant"); |
| 1073 |
} |
| 1074 |
} |
| 1075 |
|
| 1076 |
|
| 1077 |
|
| 1078 |
|
| 1079 |
class Analytify_Google_Service_Genomics_Beacon extends Analytify_Google_Model |
| 1080 |
{ |
| 1081 |
public $exists; |
| 1082 |
|
| 1083 |
public function setExists($exists) |
| 1084 |
{ |
| 1085 |
$this->exists = $exists; |
| 1086 |
} |
| 1087 |
|
| 1088 |
public function getExists() |
| 1089 |
{ |
| 1090 |
return $this->exists; |
| 1091 |
} |
| 1092 |
} |
| 1093 |
|
| 1094 |
class Analytify_Google_Service_Genomics_Call extends Analytify_Google_Collection |
| 1095 |
{ |
| 1096 |
public $callsetId; |
| 1097 |
public $callsetName; |
| 1098 |
public $genotype; |
| 1099 |
public $genotypeLikelihood; |
| 1100 |
public $info; |
| 1101 |
public $phaseset; |
| 1102 |
|
| 1103 |
public function setCallsetId($callsetId) |
| 1104 |
{ |
| 1105 |
$this->callsetId = $callsetId; |
| 1106 |
} |
| 1107 |
|
| 1108 |
public function getCallsetId() |
| 1109 |
{ |
| 1110 |
return $this->callsetId; |
| 1111 |
} |
| 1112 |
|
| 1113 |
public function setCallsetName($callsetName) |
| 1114 |
{ |
| 1115 |
$this->callsetName = $callsetName; |
| 1116 |
} |
| 1117 |
|
| 1118 |
public function getCallsetName() |
| 1119 |
{ |
| 1120 |
return $this->callsetName; |
| 1121 |
} |
| 1122 |
|
| 1123 |
public function setGenotype($genotype) |
| 1124 |
{ |
| 1125 |
$this->genotype = $genotype; |
| 1126 |
} |
| 1127 |
|
| 1128 |
public function getGenotype() |
| 1129 |
{ |
| 1130 |
return $this->genotype; |
| 1131 |
} |
| 1132 |
|
| 1133 |
public function setGenotypeLikelihood($genotypeLikelihood) |
| 1134 |
{ |
| 1135 |
$this->genotypeLikelihood = $genotypeLikelihood; |
| 1136 |
} |
| 1137 |
|
| 1138 |
public function getGenotypeLikelihood() |
| 1139 |
{ |
| 1140 |
return $this->genotypeLikelihood; |
| 1141 |
} |
| 1142 |
|
| 1143 |
public function setInfo($info) |
| 1144 |
{ |
| 1145 |
$this->info = $info; |
| 1146 |
} |
| 1147 |
|
| 1148 |
public function getInfo() |
| 1149 |
{ |
| 1150 |
return $this->info; |
| 1151 |
} |
| 1152 |
|
| 1153 |
public function setPhaseset($phaseset) |
| 1154 |
{ |
| 1155 |
$this->phaseset = $phaseset; |
| 1156 |
} |
| 1157 |
|
| 1158 |
public function getPhaseset() |
| 1159 |
{ |
| 1160 |
return $this->phaseset; |
| 1161 |
} |
| 1162 |
} |
| 1163 |
|
| 1164 |
class Analytify_Google_Service_Genomics_CallInfo extends Analytify_Google_Model |
| 1165 |
{ |
| 1166 |
|
| 1167 |
} |
| 1168 |
|
| 1169 |
class Analytify_Google_Service_Genomics_Callset extends Analytify_Google_Model |
| 1170 |
{ |
| 1171 |
public $created; |
| 1172 |
public $datasetId; |
| 1173 |
public $id; |
| 1174 |
public $info; |
| 1175 |
public $name; |
| 1176 |
|
| 1177 |
public function setCreated($created) |
| 1178 |
{ |
| 1179 |
$this->created = $created; |
| 1180 |
} |
| 1181 |
|
| 1182 |
public function getCreated() |
| 1183 |
{ |
| 1184 |
return $this->created; |
| 1185 |
} |
| 1186 |
|
| 1187 |
public function setDatasetId($datasetId) |
| 1188 |
{ |
| 1189 |
$this->datasetId = $datasetId; |
| 1190 |
} |
| 1191 |
|
| 1192 |
public function getDatasetId() |
| 1193 |
{ |
| 1194 |
return $this->datasetId; |
| 1195 |
} |
| 1196 |
|
| 1197 |
public function setId($id) |
| 1198 |
{ |
| 1199 |
$this->id = $id; |
| 1200 |
} |
| 1201 |
|
| 1202 |
public function getId() |
| 1203 |
{ |
| 1204 |
return $this->id; |
| 1205 |
} |
| 1206 |
|
| 1207 |
public function setInfo($info) |
| 1208 |
{ |
| 1209 |
$this->info = $info; |
| 1210 |
} |
| 1211 |
|
| 1212 |
public function getInfo() |
| 1213 |
{ |
| 1214 |
return $this->info; |
| 1215 |
} |
| 1216 |
|
| 1217 |
public function setName($name) |
| 1218 |
{ |
| 1219 |
$this->name = $name; |
| 1220 |
} |
| 1221 |
|
| 1222 |
public function getName() |
| 1223 |
{ |
| 1224 |
return $this->name; |
| 1225 |
} |
| 1226 |
} |
| 1227 |
|
| 1228 |
class Analytify_Google_Service_Genomics_CallsetInfo extends Analytify_Google_Model |
| 1229 |
{ |
| 1230 |
|
| 1231 |
} |
| 1232 |
|
| 1233 |
class Analytify_Google_Service_Genomics_ContigBound extends Analytify_Google_Model |
| 1234 |
{ |
| 1235 |
public $contig; |
| 1236 |
public $upperBound; |
| 1237 |
|
| 1238 |
public function setContig($contig) |
| 1239 |
{ |
| 1240 |
$this->contig = $contig; |
| 1241 |
} |
| 1242 |
|
| 1243 |
public function getContig() |
| 1244 |
{ |
| 1245 |
return $this->contig; |
| 1246 |
} |
| 1247 |
|
| 1248 |
public function setUpperBound($upperBound) |
| 1249 |
{ |
| 1250 |
$this->upperBound = $upperBound; |
| 1251 |
} |
| 1252 |
|
| 1253 |
public function getUpperBound() |
| 1254 |
{ |
| 1255 |
return $this->upperBound; |
| 1256 |
} |
| 1257 |
} |
| 1258 |
|
| 1259 |
class Analytify_Google_Service_Genomics_Dataset extends Analytify_Google_Model |
| 1260 |
{ |
| 1261 |
public $id; |
| 1262 |
public $isPublic; |
| 1263 |
public $name; |
| 1264 |
public $projectId; |
| 1265 |
|
| 1266 |
public function setId($id) |
| 1267 |
{ |
| 1268 |
$this->id = $id; |
| 1269 |
} |
| 1270 |
|
| 1271 |
public function getId() |
| 1272 |
{ |
| 1273 |
return $this->id; |
| 1274 |
} |
| 1275 |
|
| 1276 |
public function setIsPublic($isPublic) |
| 1277 |
{ |
| 1278 |
$this->isPublic = $isPublic; |
| 1279 |
} |
| 1280 |
|
| 1281 |
public function getIsPublic() |
| 1282 |
{ |
| 1283 |
return $this->isPublic; |
| 1284 |
} |
| 1285 |
|
| 1286 |
public function setName($name) |
| 1287 |
{ |
| 1288 |
$this->name = $name; |
| 1289 |
} |
| 1290 |
|
| 1291 |
public function getName() |
| 1292 |
{ |
| 1293 |
return $this->name; |
| 1294 |
} |
| 1295 |
|
| 1296 |
public function setProjectId($projectId) |
| 1297 |
{ |
| 1298 |
$this->projectId = $projectId; |
| 1299 |
} |
| 1300 |
|
| 1301 |
public function getProjectId() |
| 1302 |
{ |
| 1303 |
return $this->projectId; |
| 1304 |
} |
| 1305 |
} |
| 1306 |
|
| 1307 |
class Analytify_Google_Service_Genomics_ExperimentalCreateJobRequest extends Analytify_Google_Collection |
| 1308 |
{ |
| 1309 |
public $align; |
| 1310 |
public $callVariants; |
| 1311 |
public $gcsOutputPath; |
| 1312 |
public $pairedSourceUris; |
| 1313 |
public $projectId; |
| 1314 |
public $sourceUris; |
| 1315 |
|
| 1316 |
public function setAlign($align) |
| 1317 |
{ |
| 1318 |
$this->align = $align; |
| 1319 |
} |
| 1320 |
|
| 1321 |
public function getAlign() |
| 1322 |
{ |
| 1323 |
return $this->align; |
| 1324 |
} |
| 1325 |
|
| 1326 |
public function setCallVariants($callVariants) |
| 1327 |
{ |
| 1328 |
$this->callVariants = $callVariants; |
| 1329 |
} |
| 1330 |
|
| 1331 |
public function getCallVariants() |
| 1332 |
{ |
| 1333 |
return $this->callVariants; |
| 1334 |
} |
| 1335 |
|
| 1336 |
public function setGcsOutputPath($gcsOutputPath) |
| 1337 |
{ |
| 1338 |
$this->gcsOutputPath = $gcsOutputPath; |
| 1339 |
} |
| 1340 |
|
| 1341 |
public function getGcsOutputPath() |
| 1342 |
{ |
| 1343 |
return $this->gcsOutputPath; |
| 1344 |
} |
| 1345 |
|
| 1346 |
public function setPairedSourceUris($pairedSourceUris) |
| 1347 |
{ |
| 1348 |
$this->pairedSourceUris = $pairedSourceUris; |
| 1349 |
} |
| 1350 |
|
| 1351 |
public function getPairedSourceUris() |
| 1352 |
{ |
| 1353 |
return $this->pairedSourceUris; |
| 1354 |
} |
| 1355 |
|
| 1356 |
public function setProjectId($projectId) |
| 1357 |
{ |
| 1358 |
$this->projectId = $projectId; |
| 1359 |
} |
| 1360 |
|
| 1361 |
public function getProjectId() |
| 1362 |
{ |
| 1363 |
return $this->projectId; |
| 1364 |
} |
| 1365 |
|
| 1366 |
public function setSourceUris($sourceUris) |
| 1367 |
{ |
| 1368 |
$this->sourceUris = $sourceUris; |
| 1369 |
} |
| 1370 |
|
| 1371 |
public function getSourceUris() |
| 1372 |
{ |
| 1373 |
return $this->sourceUris; |
| 1374 |
} |
| 1375 |
} |
| 1376 |
|
| 1377 |
class Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse extends Analytify_Google_Model |
| 1378 |
{ |
| 1379 |
public $jobId; |
| 1380 |
|
| 1381 |
public function setJobId($jobId) |
| 1382 |
{ |
| 1383 |
$this->jobId = $jobId; |
| 1384 |
} |
| 1385 |
|
| 1386 |
public function getJobId() |
| 1387 |
{ |
| 1388 |
return $this->jobId; |
| 1389 |
} |
| 1390 |
} |
| 1391 |
|
| 1392 |
class Analytify_Google_Service_Genomics_ExportReadsetsRequest extends Analytify_Google_Collection |
| 1393 |
{ |
| 1394 |
public $exportUri; |
| 1395 |
public $projectId; |
| 1396 |
public $readsetIds; |
| 1397 |
|
| 1398 |
public function setExportUri($exportUri) |
| 1399 |
{ |
| 1400 |
$this->exportUri = $exportUri; |
| 1401 |
} |
| 1402 |
|
| 1403 |
public function getExportUri() |
| 1404 |
{ |
| 1405 |
return $this->exportUri; |
| 1406 |
} |
| 1407 |
|
| 1408 |
public function setProjectId($projectId) |
| 1409 |
{ |
| 1410 |
$this->projectId = $projectId; |
| 1411 |
} |
| 1412 |
|
| 1413 |
public function getProjectId() |
| 1414 |
{ |
| 1415 |
return $this->projectId; |
| 1416 |
} |
| 1417 |
|
| 1418 |
public function setReadsetIds($readsetIds) |
| 1419 |
{ |
| 1420 |
$this->readsetIds = $readsetIds; |
| 1421 |
} |
| 1422 |
|
| 1423 |
public function getReadsetIds() |
| 1424 |
{ |
| 1425 |
return $this->readsetIds; |
| 1426 |
} |
| 1427 |
} |
| 1428 |
|
| 1429 |
class Analytify_Google_Service_Genomics_ExportReadsetsResponse extends Analytify_Google_Model |
| 1430 |
{ |
| 1431 |
public $jobId; |
| 1432 |
|
| 1433 |
public function setJobId($jobId) |
| 1434 |
{ |
| 1435 |
$this->jobId = $jobId; |
| 1436 |
} |
| 1437 |
|
| 1438 |
public function getJobId() |
| 1439 |
{ |
| 1440 |
return $this->jobId; |
| 1441 |
} |
| 1442 |
} |
| 1443 |
|
| 1444 |
class Analytify_Google_Service_Genomics_ExportVariantsRequest extends Analytify_Google_Collection |
| 1445 |
{ |
| 1446 |
public $bigqueryDataset; |
| 1447 |
public $bigqueryTable; |
| 1448 |
public $callsetIds; |
| 1449 |
public $datasetId; |
| 1450 |
public $format; |
| 1451 |
public $projectId; |
| 1452 |
|
| 1453 |
public function setBigqueryDataset($bigqueryDataset) |
| 1454 |
{ |
| 1455 |
$this->bigqueryDataset = $bigqueryDataset; |
| 1456 |
} |
| 1457 |
|
| 1458 |
public function getBigqueryDataset() |
| 1459 |
{ |
| 1460 |
return $this->bigqueryDataset; |
| 1461 |
} |
| 1462 |
|
| 1463 |
public function setBigqueryTable($bigqueryTable) |
| 1464 |
{ |
| 1465 |
$this->bigqueryTable = $bigqueryTable; |
| 1466 |
} |
| 1467 |
|
| 1468 |
public function getBigqueryTable() |
| 1469 |
{ |
| 1470 |
return $this->bigqueryTable; |
| 1471 |
} |
| 1472 |
|
| 1473 |
public function setCallsetIds($callsetIds) |
| 1474 |
{ |
| 1475 |
$this->callsetIds = $callsetIds; |
| 1476 |
} |
| 1477 |
|
| 1478 |
public function getCallsetIds() |
| 1479 |
{ |
| 1480 |
return $this->callsetIds; |
| 1481 |
} |
| 1482 |
|
| 1483 |
public function setDatasetId($datasetId) |
| 1484 |
{ |
| 1485 |
$this->datasetId = $datasetId; |
| 1486 |
} |
| 1487 |
|
| 1488 |
public function getDatasetId() |
| 1489 |
{ |
| 1490 |
return $this->datasetId; |
| 1491 |
} |
| 1492 |
|
| 1493 |
public function setFormat($format) |
| 1494 |
{ |
| 1495 |
$this->format = $format; |
| 1496 |
} |
| 1497 |
|
| 1498 |
public function getFormat() |
| 1499 |
{ |
| 1500 |
return $this->format; |
| 1501 |
} |
| 1502 |
|
| 1503 |
public function setProjectId($projectId) |
| 1504 |
{ |
| 1505 |
$this->projectId = $projectId; |
| 1506 |
} |
| 1507 |
|
| 1508 |
public function getProjectId() |
| 1509 |
{ |
| 1510 |
return $this->projectId; |
| 1511 |
} |
| 1512 |
} |
| 1513 |
|
| 1514 |
class Analytify_Google_Service_Genomics_ExportVariantsResponse extends Analytify_Google_Model |
| 1515 |
{ |
| 1516 |
public $jobId; |
| 1517 |
|
| 1518 |
public function setJobId($jobId) |
| 1519 |
{ |
| 1520 |
$this->jobId = $jobId; |
| 1521 |
} |
| 1522 |
|
| 1523 |
public function getJobId() |
| 1524 |
{ |
| 1525 |
return $this->jobId; |
| 1526 |
} |
| 1527 |
} |
| 1528 |
|
| 1529 |
class Analytify_Google_Service_Genomics_GetVariantsSummaryResponse extends Analytify_Google_Collection |
| 1530 |
{ |
| 1531 |
protected $contigBoundsType = 'Analytify_Google_Service_Genomics_ContigBound'; |
| 1532 |
protected $contigBoundsDataType = 'array'; |
| 1533 |
protected $metadataType = 'Analytify_Google_Service_Genomics_Metadata'; |
| 1534 |
protected $metadataDataType = 'array'; |
| 1535 |
|
| 1536 |
public function setContigBounds($contigBounds) |
| 1537 |
{ |
| 1538 |
$this->contigBounds = $contigBounds; |
| 1539 |
} |
| 1540 |
|
| 1541 |
public function getContigBounds() |
| 1542 |
{ |
| 1543 |
return $this->contigBounds; |
| 1544 |
} |
| 1545 |
|
| 1546 |
public function setMetadata($metadata) |
| 1547 |
{ |
| 1548 |
$this->metadata = $metadata; |
| 1549 |
} |
| 1550 |
|
| 1551 |
public function getMetadata() |
| 1552 |
{ |
| 1553 |
return $this->metadata; |
| 1554 |
} |
| 1555 |
} |
| 1556 |
|
| 1557 |
class Analytify_Google_Service_Genomics_Header extends Analytify_Google_Model |
| 1558 |
{ |
| 1559 |
public $sortingOrder; |
| 1560 |
public $version; |
| 1561 |
|
| 1562 |
public function setSortingOrder($sortingOrder) |
| 1563 |
{ |
| 1564 |
$this->sortingOrder = $sortingOrder; |
| 1565 |
} |
| 1566 |
|
| 1567 |
public function getSortingOrder() |
| 1568 |
{ |
| 1569 |
return $this->sortingOrder; |
| 1570 |
} |
| 1571 |
|
| 1572 |
public function setVersion($version) |
| 1573 |
{ |
| 1574 |
$this->version = $version; |
| 1575 |
} |
| 1576 |
|
| 1577 |
public function getVersion() |
| 1578 |
{ |
| 1579 |
return $this->version; |
| 1580 |
} |
| 1581 |
} |
| 1582 |
|
| 1583 |
class Analytify_Google_Service_Genomics_HeaderSection extends Analytify_Google_Collection |
| 1584 |
{ |
| 1585 |
public $comments; |
| 1586 |
public $fileUri; |
| 1587 |
protected $headersType = 'Analytify_Google_Service_Genomics_Header'; |
| 1588 |
protected $headersDataType = 'array'; |
| 1589 |
protected $programsType = 'Analytify_Google_Service_Genomics_Program'; |
| 1590 |
protected $programsDataType = 'array'; |
| 1591 |
protected $readGroupsType = 'Analytify_Google_Service_Genomics_ReadGroup'; |
| 1592 |
protected $readGroupsDataType = 'array'; |
| 1593 |
protected $refSequencesType = 'Analytify_Google_Service_Genomics_ReferenceSequence'; |
| 1594 |
protected $refSequencesDataType = 'array'; |
| 1595 |
|
| 1596 |
public function setComments($comments) |
| 1597 |
{ |
| 1598 |
$this->comments = $comments; |
| 1599 |
} |
| 1600 |
|
| 1601 |
public function getComments() |
| 1602 |
{ |
| 1603 |
return $this->comments; |
| 1604 |
} |
| 1605 |
|
| 1606 |
public function setFileUri($fileUri) |
| 1607 |
{ |
| 1608 |
$this->fileUri = $fileUri; |
| 1609 |
} |
| 1610 |
|
| 1611 |
public function getFileUri() |
| 1612 |
{ |
| 1613 |
return $this->fileUri; |
| 1614 |
} |
| 1615 |
|
| 1616 |
public function setHeaders($headers) |
| 1617 |
{ |
| 1618 |
$this->headers = $headers; |
| 1619 |
} |
| 1620 |
|
| 1621 |
public function getHeaders() |
| 1622 |
{ |
| 1623 |
return $this->headers; |
| 1624 |
} |
| 1625 |
|
| 1626 |
public function setPrograms($programs) |
| 1627 |
{ |
| 1628 |
$this->programs = $programs; |
| 1629 |
} |
| 1630 |
|
| 1631 |
public function getPrograms() |
| 1632 |
{ |
| 1633 |
return $this->programs; |
| 1634 |
} |
| 1635 |
|
| 1636 |
public function setReadGroups($readGroups) |
| 1637 |
{ |
| 1638 |
$this->readGroups = $readGroups; |
| 1639 |
} |
| 1640 |
|
| 1641 |
public function getReadGroups() |
| 1642 |
{ |
| 1643 |
return $this->readGroups; |
| 1644 |
} |
| 1645 |
|
| 1646 |
public function setRefSequences($refSequences) |
| 1647 |
{ |
| 1648 |
$this->refSequences = $refSequences; |
| 1649 |
} |
| 1650 |
|
| 1651 |
public function getRefSequences() |
| 1652 |
{ |
| 1653 |
return $this->refSequences; |
| 1654 |
} |
| 1655 |
} |
| 1656 |
|
| 1657 |
class Analytify_Google_Service_Genomics_ImportReadsetsRequest extends Analytify_Google_Collection |
| 1658 |
{ |
| 1659 |
public $datasetId; |
| 1660 |
public $sourceUris; |
| 1661 |
|
| 1662 |
public function setDatasetId($datasetId) |
| 1663 |
{ |
| 1664 |
$this->datasetId = $datasetId; |
| 1665 |
} |
| 1666 |
|
| 1667 |
public function getDatasetId() |
| 1668 |
{ |
| 1669 |
return $this->datasetId; |
| 1670 |
} |
| 1671 |
|
| 1672 |
public function setSourceUris($sourceUris) |
| 1673 |
{ |
| 1674 |
$this->sourceUris = $sourceUris; |
| 1675 |
} |
| 1676 |
|
| 1677 |
public function getSourceUris() |
| 1678 |
{ |
| 1679 |
return $this->sourceUris; |
| 1680 |
} |
| 1681 |
} |
| 1682 |
|
| 1683 |
class Analytify_Google_Service_Genomics_ImportReadsetsResponse extends Analytify_Google_Model |
| 1684 |
{ |
| 1685 |
public $jobId; |
| 1686 |
|
| 1687 |
public function setJobId($jobId) |
| 1688 |
{ |
| 1689 |
$this->jobId = $jobId; |
| 1690 |
} |
| 1691 |
|
| 1692 |
public function getJobId() |
| 1693 |
{ |
| 1694 |
return $this->jobId; |
| 1695 |
} |
| 1696 |
} |
| 1697 |
|
| 1698 |
class Analytify_Google_Service_Genomics_ImportVariantsRequest extends Analytify_Google_Collection |
| 1699 |
{ |
| 1700 |
public $datasetId; |
| 1701 |
public $sourceUris; |
| 1702 |
|
| 1703 |
public function setDatasetId($datasetId) |
| 1704 |
{ |
| 1705 |
$this->datasetId = $datasetId; |
| 1706 |
} |
| 1707 |
|
| 1708 |
public function getDatasetId() |
| 1709 |
{ |
| 1710 |
return $this->datasetId; |
| 1711 |
} |
| 1712 |
|
| 1713 |
public function setSourceUris($sourceUris) |
| 1714 |
{ |
| 1715 |
$this->sourceUris = $sourceUris; |
| 1716 |
} |
| 1717 |
|
| 1718 |
public function getSourceUris() |
| 1719 |
{ |
| 1720 |
return $this->sourceUris; |
| 1721 |
} |
| 1722 |
} |
| 1723 |
|
| 1724 |
class Analytify_Google_Service_Genomics_ImportVariantsResponse extends Analytify_Google_Model |
| 1725 |
{ |
| 1726 |
public $jobId; |
| 1727 |
|
| 1728 |
public function setJobId($jobId) |
| 1729 |
{ |
| 1730 |
$this->jobId = $jobId; |
| 1731 |
} |
| 1732 |
|
| 1733 |
public function getJobId() |
| 1734 |
{ |
| 1735 |
return $this->jobId; |
| 1736 |
} |
| 1737 |
} |
| 1738 |
|
| 1739 |
class Analytify_Google_Service_Genomics_Job extends Analytify_Google_Collection |
| 1740 |
{ |
| 1741 |
public $created; |
| 1742 |
public $description; |
| 1743 |
public $errors; |
| 1744 |
public $id; |
| 1745 |
public $importedIds; |
| 1746 |
public $projectId; |
| 1747 |
public $status; |
| 1748 |
public $warnings; |
| 1749 |
|
| 1750 |
public function setCreated($created) |
| 1751 |
{ |
| 1752 |
$this->created = $created; |
| 1753 |
} |
| 1754 |
|
| 1755 |
public function getCreated() |
| 1756 |
{ |
| 1757 |
return $this->created; |
| 1758 |
} |
| 1759 |
|
| 1760 |
public function setDescription($description) |
| 1761 |
{ |
| 1762 |
$this->description = $description; |
| 1763 |
} |
| 1764 |
|
| 1765 |
public function getDescription() |
| 1766 |
{ |
| 1767 |
return $this->description; |
| 1768 |
} |
| 1769 |
|
| 1770 |
public function setErrors($errors) |
| 1771 |
{ |
| 1772 |
$this->errors = $errors; |
| 1773 |
} |
| 1774 |
|
| 1775 |
public function getErrors() |
| 1776 |
{ |
| 1777 |
return $this->errors; |
| 1778 |
} |
| 1779 |
|
| 1780 |
public function setId($id) |
| 1781 |
{ |
| 1782 |
$this->id = $id; |
| 1783 |
} |
| 1784 |
|
| 1785 |
public function getId() |
| 1786 |
{ |
| 1787 |
return $this->id; |
| 1788 |
} |
| 1789 |
|
| 1790 |
public function setImportedIds($importedIds) |
| 1791 |
{ |
| 1792 |
$this->importedIds = $importedIds; |
| 1793 |
} |
| 1794 |
|
| 1795 |
public function getImportedIds() |
| 1796 |
{ |
| 1797 |
return $this->importedIds; |
| 1798 |
} |
| 1799 |
|
| 1800 |
public function setProjectId($projectId) |
| 1801 |
{ |
| 1802 |
$this->projectId = $projectId; |
| 1803 |
} |
| 1804 |
|
| 1805 |
public function getProjectId() |
| 1806 |
{ |
| 1807 |
return $this->projectId; |
| 1808 |
} |
| 1809 |
|
| 1810 |
public function setStatus($status) |
| 1811 |
{ |
| 1812 |
$this->status = $status; |
| 1813 |
} |
| 1814 |
|
| 1815 |
public function getStatus() |
| 1816 |
{ |
| 1817 |
return $this->status; |
| 1818 |
} |
| 1819 |
|
| 1820 |
public function setWarnings($warnings) |
| 1821 |
{ |
| 1822 |
$this->warnings = $warnings; |
| 1823 |
} |
| 1824 |
|
| 1825 |
public function getWarnings() |
| 1826 |
{ |
| 1827 |
return $this->warnings; |
| 1828 |
} |
| 1829 |
} |
| 1830 |
|
| 1831 |
class Analytify_Google_Service_Genomics_ListDatasetsResponse extends Analytify_Google_Collection |
| 1832 |
{ |
| 1833 |
protected $datasetsType = 'Analytify_Google_Service_Genomics_Dataset'; |
| 1834 |
protected $datasetsDataType = 'array'; |
| 1835 |
public $nextPageToken; |
| 1836 |
|
| 1837 |
public function setDatasets($datasets) |
| 1838 |
{ |
| 1839 |
$this->datasets = $datasets; |
| 1840 |
} |
| 1841 |
|
| 1842 |
public function getDatasets() |
| 1843 |
{ |
| 1844 |
return $this->datasets; |
| 1845 |
} |
| 1846 |
|
| 1847 |
public function setNextPageToken($nextPageToken) |
| 1848 |
{ |
| 1849 |
$this->nextPageToken = $nextPageToken; |
| 1850 |
} |
| 1851 |
|
| 1852 |
public function getNextPageToken() |
| 1853 |
{ |
| 1854 |
return $this->nextPageToken; |
| 1855 |
} |
| 1856 |
} |
| 1857 |
|
| 1858 |
class Analytify_Google_Service_Genomics_Metadata extends Analytify_Google_Model |
| 1859 |
{ |
| 1860 |
public $description; |
| 1861 |
public $id; |
| 1862 |
public $info; |
| 1863 |
public $key; |
| 1864 |
public $number; |
| 1865 |
public $type; |
| 1866 |
public $value; |
| 1867 |
|
| 1868 |
public function setDescription($description) |
| 1869 |
{ |
| 1870 |
$this->description = $description; |
| 1871 |
} |
| 1872 |
|
| 1873 |
public function getDescription() |
| 1874 |
{ |
| 1875 |
return $this->description; |
| 1876 |
} |
| 1877 |
|
| 1878 |
public function setId($id) |
| 1879 |
{ |
| 1880 |
$this->id = $id; |
| 1881 |
} |
| 1882 |
|
| 1883 |
public function getId() |
| 1884 |
{ |
| 1885 |
return $this->id; |
| 1886 |
} |
| 1887 |
|
| 1888 |
public function setInfo($info) |
| 1889 |
{ |
| 1890 |
$this->info = $info; |
| 1891 |
} |
| 1892 |
|
| 1893 |
public function getInfo() |
| 1894 |
{ |
| 1895 |
return $this->info; |
| 1896 |
} |
| 1897 |
|
| 1898 |
public function setKey($key) |
| 1899 |
{ |
| 1900 |
$this->key = $key; |
| 1901 |
} |
| 1902 |
|
| 1903 |
public function getKey() |
| 1904 |
{ |
| 1905 |
return $this->key; |
| 1906 |
} |
| 1907 |
|
| 1908 |
public function setNumber($number) |
| 1909 |
{ |
| 1910 |
$this->number = $number; |
| 1911 |
} |
| 1912 |
|
| 1913 |
public function getNumber() |
| 1914 |
{ |
| 1915 |
return $this->number; |
| 1916 |
} |
| 1917 |
|
| 1918 |
public function setType($type) |
| 1919 |
{ |
| 1920 |
$this->type = $type; |
| 1921 |
} |
| 1922 |
|
| 1923 |
public function getType() |
| 1924 |
{ |
| 1925 |
return $this->type; |
| 1926 |
} |
| 1927 |
|
| 1928 |
public function setValue($value) |
| 1929 |
{ |
| 1930 |
$this->value = $value; |
| 1931 |
} |
| 1932 |
|
| 1933 |
public function getValue() |
| 1934 |
{ |
| 1935 |
return $this->value; |
| 1936 |
} |
| 1937 |
} |
| 1938 |
|
| 1939 |
class Analytify_Google_Service_Genomics_MetadataInfo extends Analytify_Google_Model |
| 1940 |
{ |
| 1941 |
|
| 1942 |
} |
| 1943 |
|
| 1944 |
class Analytify_Google_Service_Genomics_Program extends Analytify_Google_Model |
| 1945 |
{ |
| 1946 |
public $commandLine; |
| 1947 |
public $id; |
| 1948 |
public $name; |
| 1949 |
public $prevProgramId; |
| 1950 |
public $version; |
| 1951 |
|
| 1952 |
public function setCommandLine($commandLine) |
| 1953 |
{ |
| 1954 |
$this->commandLine = $commandLine; |
| 1955 |
} |
| 1956 |
|
| 1957 |
public function getCommandLine() |
| 1958 |
{ |
| 1959 |
return $this->commandLine; |
| 1960 |
} |
| 1961 |
|
| 1962 |
public function setId($id) |
| 1963 |
{ |
| 1964 |
$this->id = $id; |
| 1965 |
} |
| 1966 |
|
| 1967 |
public function getId() |
| 1968 |
{ |
| 1969 |
return $this->id; |
| 1970 |
} |
| 1971 |
|
| 1972 |
public function setName($name) |
| 1973 |
{ |
| 1974 |
$this->name = $name; |
| 1975 |
} |
| 1976 |
|
| 1977 |
public function getName() |
| 1978 |
{ |
| 1979 |
return $this->name; |
| 1980 |
} |
| 1981 |
|
| 1982 |
public function setPrevProgramId($prevProgramId) |
| 1983 |
{ |
| 1984 |
$this->prevProgramId = $prevProgramId; |
| 1985 |
} |
| 1986 |
|
| 1987 |
public function getPrevProgramId() |
| 1988 |
{ |
| 1989 |
return $this->prevProgramId; |
| 1990 |
} |
| 1991 |
|
| 1992 |
public function setVersion($version) |
| 1993 |
{ |
| 1994 |
$this->version = $version; |
| 1995 |
} |
| 1996 |
|
| 1997 |
public function getVersion() |
| 1998 |
{ |
| 1999 |
return $this->version; |
| 2000 |
} |
| 2001 |
} |
| 2002 |
|
| 2003 |
class Analytify_Google_Service_Genomics_Read extends Analytify_Google_Model |
| 2004 |
{ |
| 2005 |
public $alignedBases; |
| 2006 |
public $baseQuality; |
| 2007 |
public $cigar; |
| 2008 |
public $flags; |
| 2009 |
public $id; |
| 2010 |
public $mappingQuality; |
| 2011 |
public $matePosition; |
| 2012 |
public $mateReferenceSequenceName; |
| 2013 |
public $name; |
| 2014 |
public $originalBases; |
| 2015 |
public $position; |
| 2016 |
public $readsetId; |
| 2017 |
public $referenceSequenceName; |
| 2018 |
public $tags; |
| 2019 |
public $templateLength; |
| 2020 |
|
| 2021 |
public function setAlignedBases($alignedBases) |
| 2022 |
{ |
| 2023 |
$this->alignedBases = $alignedBases; |
| 2024 |
} |
| 2025 |
|
| 2026 |
public function getAlignedBases() |
| 2027 |
{ |
| 2028 |
return $this->alignedBases; |
| 2029 |
} |
| 2030 |
|
| 2031 |
public function setBaseQuality($baseQuality) |
| 2032 |
{ |
| 2033 |
$this->baseQuality = $baseQuality; |
| 2034 |
} |
| 2035 |
|
| 2036 |
public function getBaseQuality() |
| 2037 |
{ |
| 2038 |
return $this->baseQuality; |
| 2039 |
} |
| 2040 |
|
| 2041 |
public function setCigar($cigar) |
| 2042 |
{ |
| 2043 |
$this->cigar = $cigar; |
| 2044 |
} |
| 2045 |
|
| 2046 |
public function getCigar() |
| 2047 |
{ |
| 2048 |
return $this->cigar; |
| 2049 |
} |
| 2050 |
|
| 2051 |
public function setFlags($flags) |
| 2052 |
{ |
| 2053 |
$this->flags = $flags; |
| 2054 |
} |
| 2055 |
|
| 2056 |
public function getFlags() |
| 2057 |
{ |
| 2058 |
return $this->flags; |
| 2059 |
} |
| 2060 |
|
| 2061 |
public function setId($id) |
| 2062 |
{ |
| 2063 |
$this->id = $id; |
| 2064 |
} |
| 2065 |
|
| 2066 |
public function getId() |
| 2067 |
{ |
| 2068 |
return $this->id; |
| 2069 |
} |
| 2070 |
|
| 2071 |
public function setMappingQuality($mappingQuality) |
| 2072 |
{ |
| 2073 |
$this->mappingQuality = $mappingQuality; |
| 2074 |
} |
| 2075 |
|
| 2076 |
public function getMappingQuality() |
| 2077 |
{ |
| 2078 |
return $this->mappingQuality; |
| 2079 |
} |
| 2080 |
|
| 2081 |
public function setMatePosition($matePosition) |
| 2082 |
{ |
| 2083 |
$this->matePosition = $matePosition; |
| 2084 |
} |
| 2085 |
|
| 2086 |
public function getMatePosition() |
| 2087 |
{ |
| 2088 |
return $this->matePosition; |
| 2089 |
} |
| 2090 |
|
| 2091 |
public function setMateReferenceSequenceName($mateReferenceSequenceName) |
| 2092 |
{ |
| 2093 |
$this->mateReferenceSequenceName = $mateReferenceSequenceName; |
| 2094 |
} |
| 2095 |
|
| 2096 |
public function getMateReferenceSequenceName() |
| 2097 |
{ |
| 2098 |
return $this->mateReferenceSequenceName; |
| 2099 |
} |
| 2100 |
|
| 2101 |
public function setName($name) |
| 2102 |
{ |
| 2103 |
$this->name = $name; |
| 2104 |
} |
| 2105 |
|
| 2106 |
public function getName() |
| 2107 |
{ |
| 2108 |
return $this->name; |
| 2109 |
} |
| 2110 |
|
| 2111 |
public function setOriginalBases($originalBases) |
| 2112 |
{ |
| 2113 |
$this->originalBases = $originalBases; |
| 2114 |
} |
| 2115 |
|
| 2116 |
public function getOriginalBases() |
| 2117 |
{ |
| 2118 |
return $this->originalBases; |
| 2119 |
} |
| 2120 |
|
| 2121 |
public function setPosition($position) |
| 2122 |
{ |
| 2123 |
$this->position = $position; |
| 2124 |
} |
| 2125 |
|
| 2126 |
public function getPosition() |
| 2127 |
{ |
| 2128 |
return $this->position; |
| 2129 |
} |
| 2130 |
|
| 2131 |
public function setReadsetId($readsetId) |
| 2132 |
{ |
| 2133 |
$this->readsetId = $readsetId; |
| 2134 |
} |
| 2135 |
|
| 2136 |
public function getReadsetId() |
| 2137 |
{ |
| 2138 |
return $this->readsetId; |
| 2139 |
} |
| 2140 |
|
| 2141 |
public function setReferenceSequenceName($referenceSequenceName) |
| 2142 |
{ |
| 2143 |
$this->referenceSequenceName = $referenceSequenceName; |
| 2144 |
} |
| 2145 |
|
| 2146 |
public function getReferenceSequenceName() |
| 2147 |
{ |
| 2148 |
return $this->referenceSequenceName; |
| 2149 |
} |
| 2150 |
|
| 2151 |
public function setTags($tags) |
| 2152 |
{ |
| 2153 |
$this->tags = $tags; |
| 2154 |
} |
| 2155 |
|
| 2156 |
public function getTags() |
| 2157 |
{ |
| 2158 |
return $this->tags; |
| 2159 |
} |
| 2160 |
|
| 2161 |
public function setTemplateLength($templateLength) |
| 2162 |
{ |
| 2163 |
$this->templateLength = $templateLength; |
| 2164 |
} |
| 2165 |
|
| 2166 |
public function getTemplateLength() |
| 2167 |
{ |
| 2168 |
return $this->templateLength; |
| 2169 |
} |
| 2170 |
} |
| 2171 |
|
| 2172 |
class Analytify_Google_Service_Genomics_ReadGroup extends Analytify_Google_Model |
| 2173 |
{ |
| 2174 |
public $date; |
| 2175 |
public $description; |
| 2176 |
public $flowOrder; |
| 2177 |
public $id; |
| 2178 |
public $keySequence; |
| 2179 |
public $library; |
| 2180 |
public $platformUnit; |
| 2181 |
public $predictedInsertSize; |
| 2182 |
public $processingProgram; |
| 2183 |
public $sample; |
| 2184 |
public $sequencingCenterName; |
| 2185 |
public $sequencingTechnology; |
| 2186 |
|
| 2187 |
public function setDate($date) |
| 2188 |
{ |
| 2189 |
$this->date = $date; |
| 2190 |
} |
| 2191 |
|
| 2192 |
public function getDate() |
| 2193 |
{ |
| 2194 |
return $this->date; |
| 2195 |
} |
| 2196 |
|
| 2197 |
public function setDescription($description) |
| 2198 |
{ |
| 2199 |
$this->description = $description; |
| 2200 |
} |
| 2201 |
|
| 2202 |
public function getDescription() |
| 2203 |
{ |
| 2204 |
return $this->description; |
| 2205 |
} |
| 2206 |
|
| 2207 |
public function setFlowOrder($flowOrder) |
| 2208 |
{ |
| 2209 |
$this->flowOrder = $flowOrder; |
| 2210 |
} |
| 2211 |
|
| 2212 |
public function getFlowOrder() |
| 2213 |
{ |
| 2214 |
return $this->flowOrder; |
| 2215 |
} |
| 2216 |
|
| 2217 |
public function setId($id) |
| 2218 |
{ |
| 2219 |
$this->id = $id; |
| 2220 |
} |
| 2221 |
|
| 2222 |
public function getId() |
| 2223 |
{ |
| 2224 |
return $this->id; |
| 2225 |
} |
| 2226 |
|
| 2227 |
public function setKeySequence($keySequence) |
| 2228 |
{ |
| 2229 |
$this->keySequence = $keySequence; |
| 2230 |
} |
| 2231 |
|
| 2232 |
public function getKeySequence() |
| 2233 |
{ |
| 2234 |
return $this->keySequence; |
| 2235 |
} |
| 2236 |
|
| 2237 |
public function setLibrary($library) |
| 2238 |
{ |
| 2239 |
$this->library = $library; |
| 2240 |
} |
| 2241 |
|
| 2242 |
public function getLibrary() |
| 2243 |
{ |
| 2244 |
return $this->library; |
| 2245 |
} |
| 2246 |
|
| 2247 |
public function setPlatformUnit($platformUnit) |
| 2248 |
{ |
| 2249 |
$this->platformUnit = $platformUnit; |
| 2250 |
} |
| 2251 |
|
| 2252 |
public function getPlatformUnit() |
| 2253 |
{ |
| 2254 |
return $this->platformUnit; |
| 2255 |
} |
| 2256 |
|
| 2257 |
public function setPredictedInsertSize($predictedInsertSize) |
| 2258 |
{ |
| 2259 |
$this->predictedInsertSize = $predictedInsertSize; |
| 2260 |
} |
| 2261 |
|
| 2262 |
public function getPredictedInsertSize() |
| 2263 |
{ |
| 2264 |
return $this->predictedInsertSize; |
| 2265 |
} |
| 2266 |
|
| 2267 |
public function setProcessingProgram($processingProgram) |
| 2268 |
{ |
| 2269 |
$this->processingProgram = $processingProgram; |
| 2270 |
} |
| 2271 |
|
| 2272 |
public function getProcessingProgram() |
| 2273 |
{ |
| 2274 |
return $this->processingProgram; |
| 2275 |
} |
| 2276 |
|
| 2277 |
public function setSample($sample) |
| 2278 |
{ |
| 2279 |
$this->sample = $sample; |
| 2280 |
} |
| 2281 |
|
| 2282 |
public function getSample() |
| 2283 |
{ |
| 2284 |
return $this->sample; |
| 2285 |
} |
| 2286 |
|
| 2287 |
public function setSequencingCenterName($sequencingCenterName) |
| 2288 |
{ |
| 2289 |
$this->sequencingCenterName = $sequencingCenterName; |
| 2290 |
} |
| 2291 |
|
| 2292 |
public function getSequencingCenterName() |
| 2293 |
{ |
| 2294 |
return $this->sequencingCenterName; |
| 2295 |
} |
| 2296 |
|
| 2297 |
public function setSequencingTechnology($sequencingTechnology) |
| 2298 |
{ |
| 2299 |
$this->sequencingTechnology = $sequencingTechnology; |
| 2300 |
} |
| 2301 |
|
| 2302 |
public function getSequencingTechnology() |
| 2303 |
{ |
| 2304 |
return $this->sequencingTechnology; |
| 2305 |
} |
| 2306 |
} |
| 2307 |
|
| 2308 |
class Analytify_Google_Service_Genomics_ReadTags extends Analytify_Google_Model |
| 2309 |
{ |
| 2310 |
|
| 2311 |
} |
| 2312 |
|
| 2313 |
class Analytify_Google_Service_Genomics_Readset extends Analytify_Google_Collection |
| 2314 |
{ |
| 2315 |
public $datasetId; |
| 2316 |
protected $fileDataType = 'Analytify_Google_Service_Genomics_HeaderSection'; |
| 2317 |
protected $fileDataDataType = 'array'; |
| 2318 |
public $id; |
| 2319 |
public $name; |
| 2320 |
|
| 2321 |
public function setDatasetId($datasetId) |
| 2322 |
{ |
| 2323 |
$this->datasetId = $datasetId; |
| 2324 |
} |
| 2325 |
|
| 2326 |
public function getDatasetId() |
| 2327 |
{ |
| 2328 |
return $this->datasetId; |
| 2329 |
} |
| 2330 |
|
| 2331 |
public function setFileData($fileData) |
| 2332 |
{ |
| 2333 |
$this->fileData = $fileData; |
| 2334 |
} |
| 2335 |
|
| 2336 |
public function getFileData() |
| 2337 |
{ |
| 2338 |
return $this->fileData; |
| 2339 |
} |
| 2340 |
|
| 2341 |
public function setId($id) |
| 2342 |
{ |
| 2343 |
$this->id = $id; |
| 2344 |
} |
| 2345 |
|
| 2346 |
public function getId() |
| 2347 |
{ |
| 2348 |
return $this->id; |
| 2349 |
} |
| 2350 |
|
| 2351 |
public function setName($name) |
| 2352 |
{ |
| 2353 |
$this->name = $name; |
| 2354 |
} |
| 2355 |
|
| 2356 |
public function getName() |
| 2357 |
{ |
| 2358 |
return $this->name; |
| 2359 |
} |
| 2360 |
} |
| 2361 |
|
| 2362 |
class Analytify_Google_Service_Genomics_ReferenceSequence extends Analytify_Google_Model |
| 2363 |
{ |
| 2364 |
public $assemblyId; |
| 2365 |
public $length; |
| 2366 |
public $md5Checksum; |
| 2367 |
public $name; |
| 2368 |
public $species; |
| 2369 |
public $uri; |
| 2370 |
|
| 2371 |
public function setAssemblyId($assemblyId) |
| 2372 |
{ |
| 2373 |
$this->assemblyId = $assemblyId; |
| 2374 |
} |
| 2375 |
|
| 2376 |
public function getAssemblyId() |
| 2377 |
{ |
| 2378 |
return $this->assemblyId; |
| 2379 |
} |
| 2380 |
|
| 2381 |
public function setLength($length) |
| 2382 |
{ |
| 2383 |
$this->length = $length; |
| 2384 |
} |
| 2385 |
|
| 2386 |
public function getLength() |
| 2387 |
{ |
| 2388 |
return $this->length; |
| 2389 |
} |
| 2390 |
|
| 2391 |
public function setMd5Checksum($md5Checksum) |
| 2392 |
{ |
| 2393 |
$this->md5Checksum = $md5Checksum; |
| 2394 |
} |
| 2395 |
|
| 2396 |
public function getMd5Checksum() |
| 2397 |
{ |
| 2398 |
return $this->md5Checksum; |
| 2399 |
} |
| 2400 |
|
| 2401 |
public function setName($name) |
| 2402 |
{ |
| 2403 |
$this->name = $name; |
| 2404 |
} |
| 2405 |
|
| 2406 |
public function getName() |
| 2407 |
{ |
| 2408 |
return $this->name; |
| 2409 |
} |
| 2410 |
|
| 2411 |
public function setSpecies($species) |
| 2412 |
{ |
| 2413 |
$this->species = $species; |
| 2414 |
} |
| 2415 |
|
| 2416 |
public function getSpecies() |
| 2417 |
{ |
| 2418 |
return $this->species; |
| 2419 |
} |
| 2420 |
|
| 2421 |
public function setUri($uri) |
| 2422 |
{ |
| 2423 |
$this->uri = $uri; |
| 2424 |
} |
| 2425 |
|
| 2426 |
public function getUri() |
| 2427 |
{ |
| 2428 |
return $this->uri; |
| 2429 |
} |
| 2430 |
} |
| 2431 |
|
| 2432 |
class Analytify_Google_Service_Genomics_SearchCallsetsRequest extends Analytify_Google_Collection |
| 2433 |
{ |
| 2434 |
public $datasetIds; |
| 2435 |
public $maxResults; |
| 2436 |
public $name; |
| 2437 |
public $pageToken; |
| 2438 |
|
| 2439 |
public function setDatasetIds($datasetIds) |
| 2440 |
{ |
| 2441 |
$this->datasetIds = $datasetIds; |
| 2442 |
} |
| 2443 |
|
| 2444 |
public function getDatasetIds() |
| 2445 |
{ |
| 2446 |
return $this->datasetIds; |
| 2447 |
} |
| 2448 |
|
| 2449 |
public function setMaxResults($maxResults) |
| 2450 |
{ |
| 2451 |
$this->maxResults = $maxResults; |
| 2452 |
} |
| 2453 |
|
| 2454 |
public function getMaxResults() |
| 2455 |
{ |
| 2456 |
return $this->maxResults; |
| 2457 |
} |
| 2458 |
|
| 2459 |
public function setName($name) |
| 2460 |
{ |
| 2461 |
$this->name = $name; |
| 2462 |
} |
| 2463 |
|
| 2464 |
public function getName() |
| 2465 |
{ |
| 2466 |
return $this->name; |
| 2467 |
} |
| 2468 |
|
| 2469 |
public function setPageToken($pageToken) |
| 2470 |
{ |
| 2471 |
$this->pageToken = $pageToken; |
| 2472 |
} |
| 2473 |
|
| 2474 |
public function getPageToken() |
| 2475 |
{ |
| 2476 |
return $this->pageToken; |
| 2477 |
} |
| 2478 |
} |
| 2479 |
|
| 2480 |
class Analytify_Google_Service_Genomics_SearchCallsetsResponse extends Analytify_Google_Collection |
| 2481 |
{ |
| 2482 |
protected $callsetsType = 'Analytify_Google_Service_Genomics_Callset'; |
| 2483 |
protected $callsetsDataType = 'array'; |
| 2484 |
public $nextPageToken; |
| 2485 |
|
| 2486 |
public function setCallsets($callsets) |
| 2487 |
{ |
| 2488 |
$this->callsets = $callsets; |
| 2489 |
} |
| 2490 |
|
| 2491 |
public function getCallsets() |
| 2492 |
{ |
| 2493 |
return $this->callsets; |
| 2494 |
} |
| 2495 |
|
| 2496 |
public function setNextPageToken($nextPageToken) |
| 2497 |
{ |
| 2498 |
$this->nextPageToken = $nextPageToken; |
| 2499 |
} |
| 2500 |
|
| 2501 |
public function getNextPageToken() |
| 2502 |
{ |
| 2503 |
return $this->nextPageToken; |
| 2504 |
} |
| 2505 |
} |
| 2506 |
|
| 2507 |
class Analytify_Google_Service_Genomics_SearchJobsRequest extends Analytify_Google_Collection |
| 2508 |
{ |
| 2509 |
public $createdAfter; |
| 2510 |
public $createdBefore; |
| 2511 |
public $maxResults; |
| 2512 |
public $pageToken; |
| 2513 |
public $projectId; |
| 2514 |
public $status; |
| 2515 |
|
| 2516 |
public function setCreatedAfter($createdAfter) |
| 2517 |
{ |
| 2518 |
$this->createdAfter = $createdAfter; |
| 2519 |
} |
| 2520 |
|
| 2521 |
public function getCreatedAfter() |
| 2522 |
{ |
| 2523 |
return $this->createdAfter; |
| 2524 |
} |
| 2525 |
|
| 2526 |
public function setCreatedBefore($createdBefore) |
| 2527 |
{ |
| 2528 |
$this->createdBefore = $createdBefore; |
| 2529 |
} |
| 2530 |
|
| 2531 |
public function getCreatedBefore() |
| 2532 |
{ |
| 2533 |
return $this->createdBefore; |
| 2534 |
} |
| 2535 |
|
| 2536 |
public function setMaxResults($maxResults) |
| 2537 |
{ |
| 2538 |
$this->maxResults = $maxResults; |
| 2539 |
} |
| 2540 |
|
| 2541 |
public function getMaxResults() |
| 2542 |
{ |
| 2543 |
return $this->maxResults; |
| 2544 |
} |
| 2545 |
|
| 2546 |
public function setPageToken($pageToken) |
| 2547 |
{ |
| 2548 |
$this->pageToken = $pageToken; |
| 2549 |
} |
| 2550 |
|
| 2551 |
public function getPageToken() |
| 2552 |
{ |
| 2553 |
return $this->pageToken; |
| 2554 |
} |
| 2555 |
|
| 2556 |
public function setProjectId($projectId) |
| 2557 |
{ |
| 2558 |
$this->projectId = $projectId; |
| 2559 |
} |
| 2560 |
|
| 2561 |
public function getProjectId() |
| 2562 |
{ |
| 2563 |
return $this->projectId; |
| 2564 |
} |
| 2565 |
|
| 2566 |
public function setStatus($status) |
| 2567 |
{ |
| 2568 |
$this->status = $status; |
| 2569 |
} |
| 2570 |
|
| 2571 |
public function getStatus() |
| 2572 |
{ |
| 2573 |
return $this->status; |
| 2574 |
} |
| 2575 |
} |
| 2576 |
|
| 2577 |
class Analytify_Google_Service_Genomics_SearchJobsResponse extends Analytify_Google_Collection |
| 2578 |
{ |
| 2579 |
protected $jobsType = 'Analytify_Google_Service_Genomics_Job'; |
| 2580 |
protected $jobsDataType = 'array'; |
| 2581 |
public $nextPageToken; |
| 2582 |
|
| 2583 |
public function setJobs($jobs) |
| 2584 |
{ |
| 2585 |
$this->jobs = $jobs; |
| 2586 |
} |
| 2587 |
|
| 2588 |
public function getJobs() |
| 2589 |
{ |
| 2590 |
return $this->jobs; |
| 2591 |
} |
| 2592 |
|
| 2593 |
public function setNextPageToken($nextPageToken) |
| 2594 |
{ |
| 2595 |
$this->nextPageToken = $nextPageToken; |
| 2596 |
} |
| 2597 |
|
| 2598 |
public function getNextPageToken() |
| 2599 |
{ |
| 2600 |
return $this->nextPageToken; |
| 2601 |
} |
| 2602 |
} |
| 2603 |
|
| 2604 |
class Analytify_Google_Service_Genomics_SearchReadsRequest extends Analytify_Google_Collection |
| 2605 |
{ |
| 2606 |
public $maxResults; |
| 2607 |
public $pageToken; |
| 2608 |
public $readsetIds; |
| 2609 |
public $sequenceEnd; |
| 2610 |
public $sequenceName; |
| 2611 |
public $sequenceStart; |
| 2612 |
|
| 2613 |
public function setMaxResults($maxResults) |
| 2614 |
{ |
| 2615 |
$this->maxResults = $maxResults; |
| 2616 |
} |
| 2617 |
|
| 2618 |
public function getMaxResults() |
| 2619 |
{ |
| 2620 |
return $this->maxResults; |
| 2621 |
} |
| 2622 |
|
| 2623 |
public function setPageToken($pageToken) |
| 2624 |
{ |
| 2625 |
$this->pageToken = $pageToken; |
| 2626 |
} |
| 2627 |
|
| 2628 |
public function getPageToken() |
| 2629 |
{ |
| 2630 |
return $this->pageToken; |
| 2631 |
} |
| 2632 |
|
| 2633 |
public function setReadsetIds($readsetIds) |
| 2634 |
{ |
| 2635 |
$this->readsetIds = $readsetIds; |
| 2636 |
} |
| 2637 |
|
| 2638 |
public function getReadsetIds() |
| 2639 |
{ |
| 2640 |
return $this->readsetIds; |
| 2641 |
} |
| 2642 |
|
| 2643 |
public function setSequenceEnd($sequenceEnd) |
| 2644 |
{ |
| 2645 |
$this->sequenceEnd = $sequenceEnd; |
| 2646 |
} |
| 2647 |
|
| 2648 |
public function getSequenceEnd() |
| 2649 |
{ |
| 2650 |
return $this->sequenceEnd; |
| 2651 |
} |
| 2652 |
|
| 2653 |
public function setSequenceName($sequenceName) |
| 2654 |
{ |
| 2655 |
$this->sequenceName = $sequenceName; |
| 2656 |
} |
| 2657 |
|
| 2658 |
public function getSequenceName() |
| 2659 |
{ |
| 2660 |
return $this->sequenceName; |
| 2661 |
} |
| 2662 |
|
| 2663 |
public function setSequenceStart($sequenceStart) |
| 2664 |
{ |
| 2665 |
$this->sequenceStart = $sequenceStart; |
| 2666 |
} |
| 2667 |
|
| 2668 |
public function getSequenceStart() |
| 2669 |
{ |
| 2670 |
return $this->sequenceStart; |
| 2671 |
} |
| 2672 |
} |
| 2673 |
|
| 2674 |
class Analytify_Google_Service_Genomics_SearchReadsResponse extends Analytify_Google_Collection |
| 2675 |
{ |
| 2676 |
public $nextPageToken; |
| 2677 |
protected $readsType = 'Analytify_Google_Service_Genomics_Read'; |
| 2678 |
protected $readsDataType = 'array'; |
| 2679 |
|
| 2680 |
public function setNextPageToken($nextPageToken) |
| 2681 |
{ |
| 2682 |
$this->nextPageToken = $nextPageToken; |
| 2683 |
} |
| 2684 |
|
| 2685 |
public function getNextPageToken() |
| 2686 |
{ |
| 2687 |
return $this->nextPageToken; |
| 2688 |
} |
| 2689 |
|
| 2690 |
public function setReads($reads) |
| 2691 |
{ |
| 2692 |
$this->reads = $reads; |
| 2693 |
} |
| 2694 |
|
| 2695 |
public function getReads() |
| 2696 |
{ |
| 2697 |
return $this->reads; |
| 2698 |
} |
| 2699 |
} |
| 2700 |
|
| 2701 |
class Analytify_Google_Service_Genomics_SearchReadsetsRequest extends Analytify_Google_Collection |
| 2702 |
{ |
| 2703 |
public $datasetIds; |
| 2704 |
public $maxResults; |
| 2705 |
public $name; |
| 2706 |
public $pageToken; |
| 2707 |
|
| 2708 |
public function setDatasetIds($datasetIds) |
| 2709 |
{ |
| 2710 |
$this->datasetIds = $datasetIds; |
| 2711 |
} |
| 2712 |
|
| 2713 |
public function getDatasetIds() |
| 2714 |
{ |
| 2715 |
return $this->datasetIds; |
| 2716 |
} |
| 2717 |
|
| 2718 |
public function setMaxResults($maxResults) |
| 2719 |
{ |
| 2720 |
$this->maxResults = $maxResults; |
| 2721 |
} |
| 2722 |
|
| 2723 |
public function getMaxResults() |
| 2724 |
{ |
| 2725 |
return $this->maxResults; |
| 2726 |
} |
| 2727 |
|
| 2728 |
public function setName($name) |
| 2729 |
{ |
| 2730 |
$this->name = $name; |
| 2731 |
} |
| 2732 |
|
| 2733 |
public function getName() |
| 2734 |
{ |
| 2735 |
return $this->name; |
| 2736 |
} |
| 2737 |
|
| 2738 |
public function setPageToken($pageToken) |
| 2739 |
{ |
| 2740 |
$this->pageToken = $pageToken; |
| 2741 |
} |
| 2742 |
|
| 2743 |
public function getPageToken() |
| 2744 |
{ |
| 2745 |
return $this->pageToken; |
| 2746 |
} |
| 2747 |
} |
| 2748 |
|
| 2749 |
class Analytify_Google_Service_Genomics_SearchReadsetsResponse extends Analytify_Google_Collection |
| 2750 |
{ |
| 2751 |
public $nextPageToken; |
| 2752 |
protected $readsetsType = 'Analytify_Google_Service_Genomics_Readset'; |
| 2753 |
protected $readsetsDataType = 'array'; |
| 2754 |
|
| 2755 |
public function setNextPageToken($nextPageToken) |
| 2756 |
{ |
| 2757 |
$this->nextPageToken = $nextPageToken; |
| 2758 |
} |
| 2759 |
|
| 2760 |
public function getNextPageToken() |
| 2761 |
{ |
| 2762 |
return $this->nextPageToken; |
| 2763 |
} |
| 2764 |
|
| 2765 |
public function setReadsets($readsets) |
| 2766 |
{ |
| 2767 |
$this->readsets = $readsets; |
| 2768 |
} |
| 2769 |
|
| 2770 |
public function getReadsets() |
| 2771 |
{ |
| 2772 |
return $this->readsets; |
| 2773 |
} |
| 2774 |
} |
| 2775 |
|
| 2776 |
class Analytify_Google_Service_Genomics_SearchVariantsRequest extends Analytify_Google_Collection |
| 2777 |
{ |
| 2778 |
public $callsetIds; |
| 2779 |
public $callsetNames; |
| 2780 |
public $contig; |
| 2781 |
public $datasetId; |
| 2782 |
public $endPosition; |
| 2783 |
public $maxResults; |
| 2784 |
public $pageToken; |
| 2785 |
public $startPosition; |
| 2786 |
public $variantName; |
| 2787 |
|
| 2788 |
public function setCallsetIds($callsetIds) |
| 2789 |
{ |
| 2790 |
$this->callsetIds = $callsetIds; |
| 2791 |
} |
| 2792 |
|
| 2793 |
public function getCallsetIds() |
| 2794 |
{ |
| 2795 |
return $this->callsetIds; |
| 2796 |
} |
| 2797 |
|
| 2798 |
public function setCallsetNames($callsetNames) |
| 2799 |
{ |
| 2800 |
$this->callsetNames = $callsetNames; |
| 2801 |
} |
| 2802 |
|
| 2803 |
public function getCallsetNames() |
| 2804 |
{ |
| 2805 |
return $this->callsetNames; |
| 2806 |
} |
| 2807 |
|
| 2808 |
public function setContig($contig) |
| 2809 |
{ |
| 2810 |
$this->contig = $contig; |
| 2811 |
} |
| 2812 |
|
| 2813 |
public function getContig() |
| 2814 |
{ |
| 2815 |
return $this->contig; |
| 2816 |
} |
| 2817 |
|
| 2818 |
public function setDatasetId($datasetId) |
| 2819 |
{ |
| 2820 |
$this->datasetId = $datasetId; |
| 2821 |
} |
| 2822 |
|
| 2823 |
public function getDatasetId() |
| 2824 |
{ |
| 2825 |
return $this->datasetId; |
| 2826 |
} |
| 2827 |
|
| 2828 |
public function setEndPosition($endPosition) |
| 2829 |
{ |
| 2830 |
$this->endPosition = $endPosition; |
| 2831 |
} |
| 2832 |
|
| 2833 |
public function getEndPosition() |
| 2834 |
{ |
| 2835 |
return $this->endPosition; |
| 2836 |
} |
| 2837 |
|
| 2838 |
public function setMaxResults($maxResults) |
| 2839 |
{ |
| 2840 |
$this->maxResults = $maxResults; |
| 2841 |
} |
| 2842 |
|
| 2843 |
public function getMaxResults() |
| 2844 |
{ |
| 2845 |
return $this->maxResults; |
| 2846 |
} |
| 2847 |
|
| 2848 |
public function setPageToken($pageToken) |
| 2849 |
{ |
| 2850 |
$this->pageToken = $pageToken; |
| 2851 |
} |
| 2852 |
|
| 2853 |
public function getPageToken() |
| 2854 |
{ |
| 2855 |
return $this->pageToken; |
| 2856 |
} |
| 2857 |
|
| 2858 |
public function setStartPosition($startPosition) |
| 2859 |
{ |
| 2860 |
$this->startPosition = $startPosition; |
| 2861 |
} |
| 2862 |
|
| 2863 |
public function getStartPosition() |
| 2864 |
{ |
| 2865 |
return $this->startPosition; |
| 2866 |
} |
| 2867 |
|
| 2868 |
public function setVariantName($variantName) |
| 2869 |
{ |
| 2870 |
$this->variantName = $variantName; |
| 2871 |
} |
| 2872 |
|
| 2873 |
public function getVariantName() |
| 2874 |
{ |
| 2875 |
return $this->variantName; |
| 2876 |
} |
| 2877 |
} |
| 2878 |
|
| 2879 |
class Analytify_Google_Service_Genomics_SearchVariantsResponse extends Analytify_Google_Collection |
| 2880 |
{ |
| 2881 |
public $nextPageToken; |
| 2882 |
protected $variantsType = 'Analytify_Google_Service_Genomics_Variant'; |
| 2883 |
protected $variantsDataType = 'array'; |
| 2884 |
|
| 2885 |
public function setNextPageToken($nextPageToken) |
| 2886 |
{ |
| 2887 |
$this->nextPageToken = $nextPageToken; |
| 2888 |
} |
| 2889 |
|
| 2890 |
public function getNextPageToken() |
| 2891 |
{ |
| 2892 |
return $this->nextPageToken; |
| 2893 |
} |
| 2894 |
|
| 2895 |
public function setVariants($variants) |
| 2896 |
{ |
| 2897 |
$this->variants = $variants; |
| 2898 |
} |
| 2899 |
|
| 2900 |
public function getVariants() |
| 2901 |
{ |
| 2902 |
return $this->variants; |
| 2903 |
} |
| 2904 |
} |
| 2905 |
|
| 2906 |
class Analytify_Google_Service_Genomics_Variant extends Analytify_Google_Collection |
| 2907 |
{ |
| 2908 |
public $alternateBases; |
| 2909 |
protected $callsType = 'Analytify_Google_Service_Genomics_Call'; |
| 2910 |
protected $callsDataType = 'array'; |
| 2911 |
public $contig; |
| 2912 |
public $created; |
| 2913 |
public $datasetId; |
| 2914 |
public $end; |
| 2915 |
public $id; |
| 2916 |
public $info; |
| 2917 |
public $names; |
| 2918 |
public $position; |
| 2919 |
public $referenceBases; |
| 2920 |
|
| 2921 |
public function setAlternateBases($alternateBases) |
| 2922 |
{ |
| 2923 |
$this->alternateBases = $alternateBases; |
| 2924 |
} |
| 2925 |
|
| 2926 |
public function getAlternateBases() |
| 2927 |
{ |
| 2928 |
return $this->alternateBases; |
| 2929 |
} |
| 2930 |
|
| 2931 |
public function setCalls($calls) |
| 2932 |
{ |
| 2933 |
$this->calls = $calls; |
| 2934 |
} |
| 2935 |
|
| 2936 |
public function getCalls() |
| 2937 |
{ |
| 2938 |
return $this->calls; |
| 2939 |
} |
| 2940 |
|
| 2941 |
public function setContig($contig) |
| 2942 |
{ |
| 2943 |
$this->contig = $contig; |
| 2944 |
} |
| 2945 |
|
| 2946 |
public function getContig() |
| 2947 |
{ |
| 2948 |
return $this->contig; |
| 2949 |
} |
| 2950 |
|
| 2951 |
public function setCreated($created) |
| 2952 |
{ |
| 2953 |
$this->created = $created; |
| 2954 |
} |
| 2955 |
|
| 2956 |
public function getCreated() |
| 2957 |
{ |
| 2958 |
return $this->created; |
| 2959 |
} |
| 2960 |
|
| 2961 |
public function setDatasetId($datasetId) |
| 2962 |
{ |
| 2963 |
$this->datasetId = $datasetId; |
| 2964 |
} |
| 2965 |
|
| 2966 |
public function getDatasetId() |
| 2967 |
{ |
| 2968 |
return $this->datasetId; |
| 2969 |
} |
| 2970 |
|
| 2971 |
public function setEnd($end) |
| 2972 |
{ |
| 2973 |
$this->end = $end; |
| 2974 |
} |
| 2975 |
|
| 2976 |
public function getEnd() |
| 2977 |
{ |
| 2978 |
return $this->end; |
| 2979 |
} |
| 2980 |
|
| 2981 |
public function setId($id) |
| 2982 |
{ |
| 2983 |
$this->id = $id; |
| 2984 |
} |
| 2985 |
|
| 2986 |
public function getId() |
| 2987 |
{ |
| 2988 |
return $this->id; |
| 2989 |
} |
| 2990 |
|
| 2991 |
public function setInfo($info) |
| 2992 |
{ |
| 2993 |
$this->info = $info; |
| 2994 |
} |
| 2995 |
|
| 2996 |
public function getInfo() |
| 2997 |
{ |
| 2998 |
return $this->info; |
| 2999 |
} |
| 3000 |
|
| 3001 |
public function setNames($names) |
| 3002 |
{ |
| 3003 |
$this->names = $names; |
| 3004 |
} |
| 3005 |
|
| 3006 |
public function getNames() |
| 3007 |
{ |
| 3008 |
return $this->names; |
| 3009 |
} |
| 3010 |
|
| 3011 |
public function setPosition($position) |
| 3012 |
{ |
| 3013 |
$this->position = $position; |
| 3014 |
} |
| 3015 |
|
| 3016 |
public function getPosition() |
| 3017 |
{ |
| 3018 |
return $this->position; |
| 3019 |
} |
| 3020 |
|
| 3021 |
public function setReferenceBases($referenceBases) |
| 3022 |
{ |
| 3023 |
$this->referenceBases = $referenceBases; |
| 3024 |
} |
| 3025 |
|
| 3026 |
public function getReferenceBases() |
| 3027 |
{ |
| 3028 |
return $this->referenceBases; |
| 3029 |
} |
| 3030 |
} |
| 3031 |
|
| 3032 |
class Analytify_Google_Service_Genomics_VariantInfo extends Analytify_Google_Model |
| 3033 |
{ |
| 3034 |
|
| 3035 |
} |
| 3036 |
|
