| 1 |
<?php |
| 2 |
/* |
| 3 |
* Licensed under the Apache License, Version 2.0 (the "License"); you may not |
| 4 |
* use this file except in compliance with the License. You may obtain a copy of |
| 5 |
* the License at |
| 6 |
* |
| 7 |
* http://www.apache.org/licenses/LICENSE-2.0 |
| 8 |
* |
| 9 |
* Unless required by applicable law or agreed to in writing, software |
| 10 |
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT |
| 11 |
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the |
| 12 |
* License for the specific language governing permissions and limitations under |
| 13 |
* the License. |
| 14 |
*/ |
| 15 |
|
| 16 |
/** |
| 17 |
* Service definition for Genomics (v1). |
| 18 |
* |
| 19 |
* <p> |
| 20 |
* An API to store, process, explore, and share genomic data. It supports |
| 21 |
* reference-based alignments, genetic variants, and reference genomes. This API |
| 22 |
* provides an implementation of the Global Alliance for Genomics and Health |
| 23 |
* (GA4GH) v0.5.1 API as well as several extensions.</p> |
| 24 |
* |
| 25 |
* <p> |
| 26 |
* For more information about this service, see the API |
| 27 |
* <a href="" target="_blank">Documentation</a> |
| 28 |
* </p> |
| 29 |
* |
| 30 |
* @author Google, Inc. |
| 31 |
*/ |
| 32 |
class Google_Service_Genomics extends Google_Service |
| 33 |
{ |
| 34 |
/** View and manage your data in Google BigQuery. */ |
| 35 |
const BIGQUERY = |
| 36 |
"https://www.googleapis.com/auth/bigquery"; |
| 37 |
/** View and manage your data across Google Cloud Platform services. */ |
| 38 |
const CLOUD_PLATFORM = |
| 39 |
"https://www.googleapis.com/auth/cloud-platform"; |
| 40 |
/** Manage your data in Google Cloud Storage. */ |
| 41 |
const DEVSTORAGE_READ_WRITE = |
| 42 |
"https://www.googleapis.com/auth/devstorage.read_write"; |
| 43 |
/** View and manage Genomics data. */ |
| 44 |
const GENOMICS = |
| 45 |
"https://www.googleapis.com/auth/genomics"; |
| 46 |
/** View Genomics data. */ |
| 47 |
const GENOMICS_READONLY = |
| 48 |
"https://www.googleapis.com/auth/genomics.readonly"; |
| 49 |
|
| 50 |
public $callsets; |
| 51 |
public $datasets; |
| 52 |
public $operations; |
| 53 |
public $readgroupsets; |
| 54 |
public $readgroupsets_coveragebuckets; |
| 55 |
public $reads; |
| 56 |
public $references; |
| 57 |
public $references_bases; |
| 58 |
public $referencesets; |
| 59 |
public $variants; |
| 60 |
public $variantsets; |
| 61 |
|
| 62 |
|
| 63 |
/** |
| 64 |
* Constructs the internal representation of the Genomics service. |
| 65 |
* |
| 66 |
* @param Google_Client $client |
| 67 |
*/ |
| 68 |
public function __construct(Google_Client $client) |
| 69 |
{ |
| 70 |
parent::__construct($client); |
| 71 |
$this->rootUrl = 'https://genomics.googleapis.com/'; |
| 72 |
$this->servicePath = ''; |
| 73 |
$this->version = 'v1'; |
| 74 |
$this->serviceName = 'genomics'; |
| 75 |
|
| 76 |
$this->callsets = new Google_Service_Genomics_Callsets_Resource( |
| 77 |
$this, |
| 78 |
$this->serviceName, |
| 79 |
'callsets', |
| 80 |
array( |
| 81 |
'methods' => array( |
| 82 |
'create' => array( |
| 83 |
'path' => 'v1/callsets', |
| 84 |
'httpMethod' => 'POST', |
| 85 |
'parameters' => array(), |
| 86 |
),'delete' => array( |
| 87 |
'path' => 'v1/callsets/{callSetId}', |
| 88 |
'httpMethod' => 'DELETE', |
| 89 |
'parameters' => array( |
| 90 |
'callSetId' => array( |
| 91 |
'location' => 'path', |
| 92 |
'type' => 'string', |
| 93 |
'required' => true, |
| 94 |
), |
| 95 |
), |
| 96 |
),'get' => array( |
| 97 |
'path' => 'v1/callsets/{callSetId}', |
| 98 |
'httpMethod' => 'GET', |
| 99 |
'parameters' => array( |
| 100 |
'callSetId' => array( |
| 101 |
'location' => 'path', |
| 102 |
'type' => 'string', |
| 103 |
'required' => true, |
| 104 |
), |
| 105 |
), |
| 106 |
),'patch' => array( |
| 107 |
'path' => 'v1/callsets/{callSetId}', |
| 108 |
'httpMethod' => 'PATCH', |
| 109 |
'parameters' => array( |
| 110 |
'callSetId' => array( |
| 111 |
'location' => 'path', |
| 112 |
'type' => 'string', |
| 113 |
'required' => true, |
| 114 |
), |
| 115 |
'updateMask' => array( |
| 116 |
'location' => 'query', |
| 117 |
'type' => 'string', |
| 118 |
), |
| 119 |
), |
| 120 |
),'search' => array( |
| 121 |
'path' => 'v1/callsets/search', |
| 122 |
'httpMethod' => 'POST', |
| 123 |
'parameters' => array(), |
| 124 |
), |
| 125 |
) |
| 126 |
) |
| 127 |
); |
| 128 |
$this->datasets = new Google_Service_Genomics_Datasets_Resource( |
| 129 |
$this, |
| 130 |
$this->serviceName, |
| 131 |
'datasets', |
| 132 |
array( |
| 133 |
'methods' => array( |
| 134 |
'create' => array( |
| 135 |
'path' => 'v1/datasets', |
| 136 |
'httpMethod' => 'POST', |
| 137 |
'parameters' => array(), |
| 138 |
),'delete' => array( |
| 139 |
'path' => 'v1/datasets/{datasetId}', |
| 140 |
'httpMethod' => 'DELETE', |
| 141 |
'parameters' => array( |
| 142 |
'datasetId' => array( |
| 143 |
'location' => 'path', |
| 144 |
'type' => 'string', |
| 145 |
'required' => true, |
| 146 |
), |
| 147 |
), |
| 148 |
),'get' => array( |
| 149 |
'path' => 'v1/datasets/{datasetId}', |
| 150 |
'httpMethod' => 'GET', |
| 151 |
'parameters' => array( |
| 152 |
'datasetId' => array( |
| 153 |
'location' => 'path', |
| 154 |
'type' => 'string', |
| 155 |
'required' => true, |
| 156 |
), |
| 157 |
), |
| 158 |
),'getIamPolicy' => array( |
| 159 |
'path' => 'v1/{+resource}:getIamPolicy', |
| 160 |
'httpMethod' => 'POST', |
| 161 |
'parameters' => array( |
| 162 |
'resource' => array( |
| 163 |
'location' => 'path', |
| 164 |
'type' => 'string', |
| 165 |
'required' => true, |
| 166 |
), |
| 167 |
), |
| 168 |
),'list' => array( |
| 169 |
'path' => 'v1/datasets', |
| 170 |
'httpMethod' => 'GET', |
| 171 |
'parameters' => array( |
| 172 |
'projectId' => array( |
| 173 |
'location' => 'query', |
| 174 |
'type' => 'string', |
| 175 |
), |
| 176 |
'pageSize' => array( |
| 177 |
'location' => 'query', |
| 178 |
'type' => 'integer', |
| 179 |
), |
| 180 |
'pageToken' => array( |
| 181 |
'location' => 'query', |
| 182 |
'type' => 'string', |
| 183 |
), |
| 184 |
), |
| 185 |
),'patch' => array( |
| 186 |
'path' => 'v1/datasets/{datasetId}', |
| 187 |
'httpMethod' => 'PATCH', |
| 188 |
'parameters' => array( |
| 189 |
'datasetId' => array( |
| 190 |
'location' => 'path', |
| 191 |
'type' => 'string', |
| 192 |
'required' => true, |
| 193 |
), |
| 194 |
'updateMask' => array( |
| 195 |
'location' => 'query', |
| 196 |
'type' => 'string', |
| 197 |
), |
| 198 |
), |
| 199 |
),'setIamPolicy' => array( |
| 200 |
'path' => 'v1/{+resource}:setIamPolicy', |
| 201 |
'httpMethod' => 'POST', |
| 202 |
'parameters' => array( |
| 203 |
'resource' => array( |
| 204 |
'location' => 'path', |
| 205 |
'type' => 'string', |
| 206 |
'required' => true, |
| 207 |
), |
| 208 |
), |
| 209 |
),'testIamPermissions' => array( |
| 210 |
'path' => 'v1/{+resource}:testIamPermissions', |
| 211 |
'httpMethod' => 'POST', |
| 212 |
'parameters' => array( |
| 213 |
'resource' => array( |
| 214 |
'location' => 'path', |
| 215 |
'type' => 'string', |
| 216 |
'required' => true, |
| 217 |
), |
| 218 |
), |
| 219 |
),'undelete' => array( |
| 220 |
'path' => 'v1/datasets/{datasetId}:undelete', |
| 221 |
'httpMethod' => 'POST', |
| 222 |
'parameters' => array( |
| 223 |
'datasetId' => array( |
| 224 |
'location' => 'path', |
| 225 |
'type' => 'string', |
| 226 |
'required' => true, |
| 227 |
), |
| 228 |
), |
| 229 |
), |
| 230 |
) |
| 231 |
) |
| 232 |
); |
| 233 |
$this->operations = new Google_Service_Genomics_Operations_Resource( |
| 234 |
$this, |
| 235 |
$this->serviceName, |
| 236 |
'operations', |
| 237 |
array( |
| 238 |
'methods' => array( |
| 239 |
'cancel' => array( |
| 240 |
'path' => 'v1/{+name}:cancel', |
| 241 |
'httpMethod' => 'POST', |
| 242 |
'parameters' => array( |
| 243 |
'name' => array( |
| 244 |
'location' => 'path', |
| 245 |
'type' => 'string', |
| 246 |
'required' => true, |
| 247 |
), |
| 248 |
), |
| 249 |
),'get' => array( |
| 250 |
'path' => 'v1/{+name}', |
| 251 |
'httpMethod' => 'GET', |
| 252 |
'parameters' => array( |
| 253 |
'name' => array( |
| 254 |
'location' => 'path', |
| 255 |
'type' => 'string', |
| 256 |
'required' => true, |
| 257 |
), |
| 258 |
), |
| 259 |
),'list' => array( |
| 260 |
'path' => 'v1/{+name}', |
| 261 |
'httpMethod' => 'GET', |
| 262 |
'parameters' => array( |
| 263 |
'name' => array( |
| 264 |
'location' => 'path', |
| 265 |
'type' => 'string', |
| 266 |
'required' => true, |
| 267 |
), |
| 268 |
'filter' => array( |
| 269 |
'location' => 'query', |
| 270 |
'type' => 'string', |
| 271 |
), |
| 272 |
'pageSize' => array( |
| 273 |
'location' => 'query', |
| 274 |
'type' => 'integer', |
| 275 |
), |
| 276 |
'pageToken' => array( |
| 277 |
'location' => 'query', |
| 278 |
'type' => 'string', |
| 279 |
), |
| 280 |
), |
| 281 |
), |
| 282 |
) |
| 283 |
) |
| 284 |
); |
| 285 |
$this->readgroupsets = new Google_Service_Genomics_Readgroupsets_Resource( |
| 286 |
$this, |
| 287 |
$this->serviceName, |
| 288 |
'readgroupsets', |
| 289 |
array( |
| 290 |
'methods' => array( |
| 291 |
'delete' => array( |
| 292 |
'path' => 'v1/readgroupsets/{readGroupSetId}', |
| 293 |
'httpMethod' => 'DELETE', |
| 294 |
'parameters' => array( |
| 295 |
'readGroupSetId' => array( |
| 296 |
'location' => 'path', |
| 297 |
'type' => 'string', |
| 298 |
'required' => true, |
| 299 |
), |
| 300 |
), |
| 301 |
),'export' => array( |
| 302 |
'path' => 'v1/readgroupsets/{readGroupSetId}:export', |
| 303 |
'httpMethod' => 'POST', |
| 304 |
'parameters' => array( |
| 305 |
'readGroupSetId' => array( |
| 306 |
'location' => 'path', |
| 307 |
'type' => 'string', |
| 308 |
'required' => true, |
| 309 |
), |
| 310 |
), |
| 311 |
),'get' => array( |
| 312 |
'path' => 'v1/readgroupsets/{readGroupSetId}', |
| 313 |
'httpMethod' => 'GET', |
| 314 |
'parameters' => array( |
| 315 |
'readGroupSetId' => array( |
| 316 |
'location' => 'path', |
| 317 |
'type' => 'string', |
| 318 |
'required' => true, |
| 319 |
), |
| 320 |
), |
| 321 |
),'import' => array( |
| 322 |
'path' => 'v1/readgroupsets:import', |
| 323 |
'httpMethod' => 'POST', |
| 324 |
'parameters' => array(), |
| 325 |
),'patch' => array( |
| 326 |
'path' => 'v1/readgroupsets/{readGroupSetId}', |
| 327 |
'httpMethod' => 'PATCH', |
| 328 |
'parameters' => array( |
| 329 |
'readGroupSetId' => array( |
| 330 |
'location' => 'path', |
| 331 |
'type' => 'string', |
| 332 |
'required' => true, |
| 333 |
), |
| 334 |
'updateMask' => array( |
| 335 |
'location' => 'query', |
| 336 |
'type' => 'string', |
| 337 |
), |
| 338 |
), |
| 339 |
),'search' => array( |
| 340 |
'path' => 'v1/readgroupsets/search', |
| 341 |
'httpMethod' => 'POST', |
| 342 |
'parameters' => array(), |
| 343 |
), |
| 344 |
) |
| 345 |
) |
| 346 |
); |
| 347 |
$this->readgroupsets_coveragebuckets = new Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource( |
| 348 |
$this, |
| 349 |
$this->serviceName, |
| 350 |
'coveragebuckets', |
| 351 |
array( |
| 352 |
'methods' => array( |
| 353 |
'list' => array( |
| 354 |
'path' => 'v1/readgroupsets/{readGroupSetId}/coveragebuckets', |
| 355 |
'httpMethod' => 'GET', |
| 356 |
'parameters' => array( |
| 357 |
'readGroupSetId' => array( |
| 358 |
'location' => 'path', |
| 359 |
'type' => 'string', |
| 360 |
'required' => true, |
| 361 |
), |
| 362 |
'referenceName' => array( |
| 363 |
'location' => 'query', |
| 364 |
'type' => 'string', |
| 365 |
), |
| 366 |
'start' => array( |
| 367 |
'location' => 'query', |
| 368 |
'type' => 'string', |
| 369 |
), |
| 370 |
'end' => array( |
| 371 |
'location' => 'query', |
| 372 |
'type' => 'string', |
| 373 |
), |
| 374 |
'targetBucketWidth' => array( |
| 375 |
'location' => 'query', |
| 376 |
'type' => 'string', |
| 377 |
), |
| 378 |
'pageToken' => array( |
| 379 |
'location' => 'query', |
| 380 |
'type' => 'string', |
| 381 |
), |
| 382 |
'pageSize' => array( |
| 383 |
'location' => 'query', |
| 384 |
'type' => 'integer', |
| 385 |
), |
| 386 |
), |
| 387 |
), |
| 388 |
) |
| 389 |
) |
| 390 |
); |
| 391 |
$this->reads = new Google_Service_Genomics_Reads_Resource( |
| 392 |
$this, |
| 393 |
$this->serviceName, |
| 394 |
'reads', |
| 395 |
array( |
| 396 |
'methods' => array( |
| 397 |
'search' => array( |
| 398 |
'path' => 'v1/reads/search', |
| 399 |
'httpMethod' => 'POST', |
| 400 |
'parameters' => array(), |
| 401 |
),'stream' => array( |
| 402 |
'path' => 'v1/reads:stream', |
| 403 |
'httpMethod' => 'POST', |
| 404 |
'parameters' => array(), |
| 405 |
), |
| 406 |
) |
| 407 |
) |
| 408 |
); |
| 409 |
$this->references = new Google_Service_Genomics_References_Resource( |
| 410 |
$this, |
| 411 |
$this->serviceName, |
| 412 |
'references', |
| 413 |
array( |
| 414 |
'methods' => array( |
| 415 |
'get' => array( |
| 416 |
'path' => 'v1/references/{referenceId}', |
| 417 |
'httpMethod' => 'GET', |
| 418 |
'parameters' => array( |
| 419 |
'referenceId' => array( |
| 420 |
'location' => 'path', |
| 421 |
'type' => 'string', |
| 422 |
'required' => true, |
| 423 |
), |
| 424 |
), |
| 425 |
),'search' => array( |
| 426 |
'path' => 'v1/references/search', |
| 427 |
'httpMethod' => 'POST', |
| 428 |
'parameters' => array(), |
| 429 |
), |
| 430 |
) |
| 431 |
) |
| 432 |
); |
| 433 |
$this->references_bases = new Google_Service_Genomics_ReferencesBases_Resource( |
| 434 |
$this, |
| 435 |
$this->serviceName, |
| 436 |
'bases', |
| 437 |
array( |
| 438 |
'methods' => array( |
| 439 |
'list' => array( |
| 440 |
'path' => 'v1/references/{referenceId}/bases', |
| 441 |
'httpMethod' => 'GET', |
| 442 |
'parameters' => array( |
| 443 |
'referenceId' => array( |
| 444 |
'location' => 'path', |
| 445 |
'type' => 'string', |
| 446 |
'required' => true, |
| 447 |
), |
| 448 |
'start' => array( |
| 449 |
'location' => 'query', |
| 450 |
'type' => 'string', |
| 451 |
), |
| 452 |
'end' => array( |
| 453 |
'location' => 'query', |
| 454 |
'type' => 'string', |
| 455 |
), |
| 456 |
'pageToken' => array( |
| 457 |
'location' => 'query', |
| 458 |
'type' => 'string', |
| 459 |
), |
| 460 |
'pageSize' => array( |
| 461 |
'location' => 'query', |
| 462 |
'type' => 'integer', |
| 463 |
), |
| 464 |
), |
| 465 |
), |
| 466 |
) |
| 467 |
) |
| 468 |
); |
| 469 |
$this->referencesets = new Google_Service_Genomics_Referencesets_Resource( |
| 470 |
$this, |
| 471 |
$this->serviceName, |
| 472 |
'referencesets', |
| 473 |
array( |
| 474 |
'methods' => array( |
| 475 |
'get' => array( |
| 476 |
'path' => 'v1/referencesets/{referenceSetId}', |
| 477 |
'httpMethod' => 'GET', |
| 478 |
'parameters' => array( |
| 479 |
'referenceSetId' => array( |
| 480 |
'location' => 'path', |
| 481 |
'type' => 'string', |
| 482 |
'required' => true, |
| 483 |
), |
| 484 |
), |
| 485 |
),'search' => array( |
| 486 |
'path' => 'v1/referencesets/search', |
| 487 |
'httpMethod' => 'POST', |
| 488 |
'parameters' => array(), |
| 489 |
), |
| 490 |
) |
| 491 |
) |
| 492 |
); |
| 493 |
$this->variants = new Google_Service_Genomics_Variants_Resource( |
| 494 |
$this, |
| 495 |
$this->serviceName, |
| 496 |
'variants', |
| 497 |
array( |
| 498 |
'methods' => array( |
| 499 |
'create' => array( |
| 500 |
'path' => 'v1/variants', |
| 501 |
'httpMethod' => 'POST', |
| 502 |
'parameters' => array(), |
| 503 |
),'delete' => array( |
| 504 |
'path' => 'v1/variants/{variantId}', |
| 505 |
'httpMethod' => 'DELETE', |
| 506 |
'parameters' => array( |
| 507 |
'variantId' => array( |
| 508 |
'location' => 'path', |
| 509 |
'type' => 'string', |
| 510 |
'required' => true, |
| 511 |
), |
| 512 |
), |
| 513 |
),'get' => array( |
| 514 |
'path' => 'v1/variants/{variantId}', |
| 515 |
'httpMethod' => 'GET', |
| 516 |
'parameters' => array( |
| 517 |
'variantId' => array( |
| 518 |
'location' => 'path', |
| 519 |
'type' => 'string', |
| 520 |
'required' => true, |
| 521 |
), |
| 522 |
), |
| 523 |
),'import' => array( |
| 524 |
'path' => 'v1/variants:import', |
| 525 |
'httpMethod' => 'POST', |
| 526 |
'parameters' => array(), |
| 527 |
),'patch' => array( |
| 528 |
'path' => 'v1/variants/{variantId}', |
| 529 |
'httpMethod' => 'PATCH', |
| 530 |
'parameters' => array( |
| 531 |
'variantId' => array( |
| 532 |
'location' => 'path', |
| 533 |
'type' => 'string', |
| 534 |
'required' => true, |
| 535 |
), |
| 536 |
'updateMask' => array( |
| 537 |
'location' => 'query', |
| 538 |
'type' => 'string', |
| 539 |
), |
| 540 |
), |
| 541 |
),'search' => array( |
| 542 |
'path' => 'v1/variants/search', |
| 543 |
'httpMethod' => 'POST', |
| 544 |
'parameters' => array(), |
| 545 |
),'stream' => array( |
| 546 |
'path' => 'v1/variants:stream', |
| 547 |
'httpMethod' => 'POST', |
| 548 |
'parameters' => array(), |
| 549 |
), |
| 550 |
) |
| 551 |
) |
| 552 |
); |
| 553 |
$this->variantsets = new Google_Service_Genomics_Variantsets_Resource( |
| 554 |
$this, |
| 555 |
$this->serviceName, |
| 556 |
'variantsets', |
| 557 |
array( |
| 558 |
'methods' => array( |
| 559 |
'create' => array( |
| 560 |
'path' => 'v1/variantsets', |
| 561 |
'httpMethod' => 'POST', |
| 562 |
'parameters' => array(), |
| 563 |
),'delete' => array( |
| 564 |
'path' => 'v1/variantsets/{variantSetId}', |
| 565 |
'httpMethod' => 'DELETE', |
| 566 |
'parameters' => array( |
| 567 |
'variantSetId' => array( |
| 568 |
'location' => 'path', |
| 569 |
'type' => 'string', |
| 570 |
'required' => true, |
| 571 |
), |
| 572 |
), |
| 573 |
),'export' => array( |
| 574 |
'path' => 'v1/variantsets/{variantSetId}:export', |
| 575 |
'httpMethod' => 'POST', |
| 576 |
'parameters' => array( |
| 577 |
'variantSetId' => array( |
| 578 |
'location' => 'path', |
| 579 |
'type' => 'string', |
| 580 |
'required' => true, |
| 581 |
), |
| 582 |
), |
| 583 |
),'get' => array( |
| 584 |
'path' => 'v1/variantsets/{variantSetId}', |
| 585 |
'httpMethod' => 'GET', |
| 586 |
'parameters' => array( |
| 587 |
'variantSetId' => array( |
| 588 |
'location' => 'path', |
| 589 |
'type' => 'string', |
| 590 |
'required' => true, |
| 591 |
), |
| 592 |
), |
| 593 |
),'patch' => array( |
| 594 |
'path' => 'v1/variantsets/{variantSetId}', |
| 595 |
'httpMethod' => 'PATCH', |
| 596 |
'parameters' => array( |
| 597 |
'variantSetId' => array( |
| 598 |
'location' => 'path', |
| 599 |
'type' => 'string', |
| 600 |
'required' => true, |
| 601 |
), |
| 602 |
'updateMask' => array( |
| 603 |
'location' => 'query', |
| 604 |
'type' => 'string', |
| 605 |
), |
| 606 |
), |
| 607 |
),'search' => array( |
| 608 |
'path' => 'v1/variantsets/search', |
| 609 |
'httpMethod' => 'POST', |
| 610 |
'parameters' => array(), |
| 611 |
), |
| 612 |
) |
| 613 |
) |
| 614 |
); |
| 615 |
} |
| 616 |
} |
| 617 |
|
| 618 |
|
| 619 |
/** |
| 620 |
* The "callsets" collection of methods. |
| 621 |
* Typical usage is: |
| 622 |
* <code> |
| 623 |
* $genomicsService = new Google_Service_Genomics(...); |
| 624 |
* $callsets = $genomicsService->callsets; |
| 625 |
* </code> |
| 626 |
*/ |
| 627 |
class Google_Service_Genomics_Callsets_Resource extends Google_Service_Resource |
| 628 |
{ |
| 629 |
|
| 630 |
/** |
| 631 |
* Creates a new call set. For the definitions of call sets and other genomics |
| 632 |
* resources, see [Fundamentals of Google |
| 633 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 634 |
* (callsets.create) |
| 635 |
* |
| 636 |
* @param Google_CallSet $postBody |
| 637 |
* @param array $optParams Optional parameters. |
| 638 |
* @return Google_Service_Genomics_CallSet |
| 639 |
*/ |
| 640 |
public function create(Google_Service_Genomics_CallSet $postBody, $optParams = array()) |
| 641 |
{ |
| 642 |
$params = array('postBody' => $postBody); |
| 643 |
$params = array_merge($params, $optParams); |
| 644 |
return $this->call('create', array($params), "Google_Service_Genomics_CallSet"); |
| 645 |
} |
| 646 |
|
| 647 |
/** |
| 648 |
* Deletes a call set. For the definitions of call sets and other genomics |
| 649 |
* resources, see [Fundamentals of Google |
| 650 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 651 |
* (callsets.delete) |
| 652 |
* |
| 653 |
* @param string $callSetId The ID of the call set to be deleted. |
| 654 |
* @param array $optParams Optional parameters. |
| 655 |
* @return Google_Service_Genomics_Empty |
| 656 |
*/ |
| 657 |
public function delete($callSetId, $optParams = array()) |
| 658 |
{ |
| 659 |
$params = array('callSetId' => $callSetId); |
| 660 |
$params = array_merge($params, $optParams); |
| 661 |
return $this->call('delete', array($params), "Google_Service_Genomics_Empty"); |
| 662 |
} |
| 663 |
|
| 664 |
/** |
| 665 |
* Gets a call set by ID. For the definitions of call sets and other genomics |
| 666 |
* resources, see [Fundamentals of Google |
| 667 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 668 |
* (callsets.get) |
| 669 |
* |
| 670 |
* @param string $callSetId The ID of the call set. |
| 671 |
* @param array $optParams Optional parameters. |
| 672 |
* @return Google_Service_Genomics_CallSet |
| 673 |
*/ |
| 674 |
public function get($callSetId, $optParams = array()) |
| 675 |
{ |
| 676 |
$params = array('callSetId' => $callSetId); |
| 677 |
$params = array_merge($params, $optParams); |
| 678 |
return $this->call('get', array($params), "Google_Service_Genomics_CallSet"); |
| 679 |
} |
| 680 |
|
| 681 |
/** |
| 682 |
* Updates a call set. For the definitions of call sets and other genomics |
| 683 |
* resources, see [Fundamentals of Google |
| 684 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 685 |
* This method supports patch semantics. (callsets.patch) |
| 686 |
* |
| 687 |
* @param string $callSetId The ID of the call set to be updated. |
| 688 |
* @param Google_CallSet $postBody |
| 689 |
* @param array $optParams Optional parameters. |
| 690 |
* |
| 691 |
* @opt_param string updateMask An optional mask specifying which fields to |
| 692 |
* update. At this time, the only mutable field is name. The only acceptable |
| 693 |
* value is "name". If unspecified, all mutable fields will be updated. |
| 694 |
* @return Google_Service_Genomics_CallSet |
| 695 |
*/ |
| 696 |
public function patch($callSetId, Google_Service_Genomics_CallSet $postBody, $optParams = array()) |
| 697 |
{ |
| 698 |
$params = array('callSetId' => $callSetId, 'postBody' => $postBody); |
| 699 |
$params = array_merge($params, $optParams); |
| 700 |
return $this->call('patch', array($params), "Google_Service_Genomics_CallSet"); |
| 701 |
} |
| 702 |
|
| 703 |
/** |
| 704 |
* Gets a list of call sets matching the criteria. For the definitions of call |
| 705 |
* sets and other genomics resources, see [Fundamentals of Google |
| 706 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 707 |
* Implements [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schema |
| 708 |
* s/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178). |
| 709 |
* (callsets.search) |
| 710 |
* |
| 711 |
* @param Google_SearchCallSetsRequest $postBody |
| 712 |
* @param array $optParams Optional parameters. |
| 713 |
* @return Google_Service_Genomics_SearchCallSetsResponse |
| 714 |
*/ |
| 715 |
public function search(Google_Service_Genomics_SearchCallSetsRequest $postBody, $optParams = array()) |
| 716 |
{ |
| 717 |
$params = array('postBody' => $postBody); |
| 718 |
$params = array_merge($params, $optParams); |
| 719 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchCallSetsResponse"); |
| 720 |
} |
| 721 |
} |
| 722 |
|
| 723 |
/** |
| 724 |
* The "datasets" collection of methods. |
| 725 |
* Typical usage is: |
| 726 |
* <code> |
| 727 |
* $genomicsService = new Google_Service_Genomics(...); |
| 728 |
* $datasets = $genomicsService->datasets; |
| 729 |
* </code> |
| 730 |
*/ |
| 731 |
class Google_Service_Genomics_Datasets_Resource extends Google_Service_Resource |
| 732 |
{ |
| 733 |
|
| 734 |
/** |
| 735 |
* Creates a new dataset. For the definitions of datasets and other genomics |
| 736 |
* resources, see [Fundamentals of Google |
| 737 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 738 |
* (datasets.create) |
| 739 |
* |
| 740 |
* @param Google_Dataset $postBody |
| 741 |
* @param array $optParams Optional parameters. |
| 742 |
* @return Google_Service_Genomics_Dataset |
| 743 |
*/ |
| 744 |
public function create(Google_Service_Genomics_Dataset $postBody, $optParams = array()) |
| 745 |
{ |
| 746 |
$params = array('postBody' => $postBody); |
| 747 |
$params = array_merge($params, $optParams); |
| 748 |
return $this->call('create', array($params), "Google_Service_Genomics_Dataset"); |
| 749 |
} |
| 750 |
|
| 751 |
/** |
| 752 |
* Deletes a dataset. For the definitions of datasets and other genomics |
| 753 |
* resources, see [Fundamentals of Google |
| 754 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 755 |
* (datasets.delete) |
| 756 |
* |
| 757 |
* @param string $datasetId The ID of the dataset to be deleted. |
| 758 |
* @param array $optParams Optional parameters. |
| 759 |
* @return Google_Service_Genomics_Empty |
| 760 |
*/ |
| 761 |
public function delete($datasetId, $optParams = array()) |
| 762 |
{ |
| 763 |
$params = array('datasetId' => $datasetId); |
| 764 |
$params = array_merge($params, $optParams); |
| 765 |
return $this->call('delete', array($params), "Google_Service_Genomics_Empty"); |
| 766 |
} |
| 767 |
|
| 768 |
/** |
| 769 |
* Gets a dataset by ID. For the definitions of datasets and other genomics |
| 770 |
* resources, see [Fundamentals of Google |
| 771 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 772 |
* (datasets.get) |
| 773 |
* |
| 774 |
* @param string $datasetId The ID of the dataset. |
| 775 |
* @param array $optParams Optional parameters. |
| 776 |
* @return Google_Service_Genomics_Dataset |
| 777 |
*/ |
| 778 |
public function get($datasetId, $optParams = array()) |
| 779 |
{ |
| 780 |
$params = array('datasetId' => $datasetId); |
| 781 |
$params = array_merge($params, $optParams); |
| 782 |
return $this->call('get', array($params), "Google_Service_Genomics_Dataset"); |
| 783 |
} |
| 784 |
|
| 785 |
/** |
| 786 |
* Gets the access control policy for the dataset. This is empty if the policy |
| 787 |
* or resource does not exist. See Getting a Policy for more information. For |
| 788 |
* the definitions of datasets and other genomics resources, see [Fundamentals |
| 789 |
* of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google- |
| 790 |
* genomics) (datasets.getIamPolicy) |
| 791 |
* |
| 792 |
* @param string $resource REQUIRED: The resource for which policy is being |
| 793 |
* specified. Format is `datasets/`. |
| 794 |
* @param Google_GetIamPolicyRequest $postBody |
| 795 |
* @param array $optParams Optional parameters. |
| 796 |
* @return Google_Service_Genomics_Policy |
| 797 |
*/ |
| 798 |
public function getIamPolicy($resource, Google_Service_Genomics_GetIamPolicyRequest $postBody, $optParams = array()) |
| 799 |
{ |
| 800 |
$params = array('resource' => $resource, 'postBody' => $postBody); |
| 801 |
$params = array_merge($params, $optParams); |
| 802 |
return $this->call('getIamPolicy', array($params), "Google_Service_Genomics_Policy"); |
| 803 |
} |
| 804 |
|
| 805 |
/** |
| 806 |
* Lists datasets within a project. For the definitions of datasets and other |
| 807 |
* genomics resources, see [Fundamentals of Google |
| 808 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 809 |
* (datasets.listDatasets) |
| 810 |
* |
| 811 |
* @param array $optParams Optional parameters. |
| 812 |
* |
| 813 |
* @opt_param string projectId Required. The project to list datasets for. |
| 814 |
* @opt_param int pageSize The maximum number of results to return in a single |
| 815 |
* page. If unspecified, defaults to 50. The maximum value is 1024. |
| 816 |
* @opt_param string pageToken The continuation token, which is used to page |
| 817 |
* through large result sets. To get the next page of results, set this |
| 818 |
* parameter to the value of `nextPageToken` from the previous response. |
| 819 |
* @return Google_Service_Genomics_ListDatasetsResponse |
| 820 |
*/ |
| 821 |
public function listDatasets($optParams = array()) |
| 822 |
{ |
| 823 |
$params = array(); |
| 824 |
$params = array_merge($params, $optParams); |
| 825 |
return $this->call('list', array($params), "Google_Service_Genomics_ListDatasetsResponse"); |
| 826 |
} |
| 827 |
|
| 828 |
/** |
| 829 |
* Updates a dataset. For the definitions of datasets and other genomics |
| 830 |
* resources, see [Fundamentals of Google |
| 831 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 832 |
* This method supports patch semantics. (datasets.patch) |
| 833 |
* |
| 834 |
* @param string $datasetId The ID of the dataset to be updated. |
| 835 |
* @param Google_Dataset $postBody |
| 836 |
* @param array $optParams Optional parameters. |
| 837 |
* |
| 838 |
* @opt_param string updateMask An optional mask specifying which fields to |
| 839 |
* update. At this time, the only mutable field is name. The only acceptable |
| 840 |
* value is "name". If unspecified, all mutable fields will be updated. |
| 841 |
* @return Google_Service_Genomics_Dataset |
| 842 |
*/ |
| 843 |
public function patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array()) |
| 844 |
{ |
| 845 |
$params = array('datasetId' => $datasetId, 'postBody' => $postBody); |
| 846 |
$params = array_merge($params, $optParams); |
| 847 |
return $this->call('patch', array($params), "Google_Service_Genomics_Dataset"); |
| 848 |
} |
| 849 |
|
| 850 |
/** |
| 851 |
* Sets the access control policy on the specified dataset. Replaces any |
| 852 |
* existing policy. For the definitions of datasets and other genomics |
| 853 |
* resources, see [Fundamentals of Google |
| 854 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 855 |
* See Setting a Policy for more information. (datasets.setIamPolicy) |
| 856 |
* |
| 857 |
* @param string $resource REQUIRED: The resource for which policy is being |
| 858 |
* specified. Format is `datasets/`. |
| 859 |
* @param Google_SetIamPolicyRequest $postBody |
| 860 |
* @param array $optParams Optional parameters. |
| 861 |
* @return Google_Service_Genomics_Policy |
| 862 |
*/ |
| 863 |
public function setIamPolicy($resource, Google_Service_Genomics_SetIamPolicyRequest $postBody, $optParams = array()) |
| 864 |
{ |
| 865 |
$params = array('resource' => $resource, 'postBody' => $postBody); |
| 866 |
$params = array_merge($params, $optParams); |
| 867 |
return $this->call('setIamPolicy', array($params), "Google_Service_Genomics_Policy"); |
| 868 |
} |
| 869 |
|
| 870 |
/** |
| 871 |
* Returns permissions that a caller has on the specified resource. See Testing |
| 872 |
* Permissions for more information. For the definitions of datasets and other |
| 873 |
* genomics resources, see [Fundamentals of Google |
| 874 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 875 |
* (datasets.testIamPermissions) |
| 876 |
* |
| 877 |
* @param string $resource REQUIRED: The resource for which policy is being |
| 878 |
* specified. Format is `datasets/`. |
| 879 |
* @param Google_TestIamPermissionsRequest $postBody |
| 880 |
* @param array $optParams Optional parameters. |
| 881 |
* @return Google_Service_Genomics_TestIamPermissionsResponse |
| 882 |
*/ |
| 883 |
public function testIamPermissions($resource, Google_Service_Genomics_TestIamPermissionsRequest $postBody, $optParams = array()) |
| 884 |
{ |
| 885 |
$params = array('resource' => $resource, 'postBody' => $postBody); |
| 886 |
$params = array_merge($params, $optParams); |
| 887 |
return $this->call('testIamPermissions', array($params), "Google_Service_Genomics_TestIamPermissionsResponse"); |
| 888 |
} |
| 889 |
|
| 890 |
/** |
| 891 |
* Undeletes a dataset by restoring a dataset which was deleted via this API. |
| 892 |
* For the definitions of datasets and other genomics resources, see |
| 893 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 894 |
* /fundamentals-of-google-genomics) This operation is only possible for a week |
| 895 |
* after the deletion occurred. (datasets.undelete) |
| 896 |
* |
| 897 |
* @param string $datasetId The ID of the dataset to be undeleted. |
| 898 |
* @param Google_UndeleteDatasetRequest $postBody |
| 899 |
* @param array $optParams Optional parameters. |
| 900 |
* @return Google_Service_Genomics_Dataset |
| 901 |
*/ |
| 902 |
public function undelete($datasetId, Google_Service_Genomics_UndeleteDatasetRequest $postBody, $optParams = array()) |
| 903 |
{ |
| 904 |
$params = array('datasetId' => $datasetId, 'postBody' => $postBody); |
| 905 |
$params = array_merge($params, $optParams); |
| 906 |
return $this->call('undelete', array($params), "Google_Service_Genomics_Dataset"); |
| 907 |
} |
| 908 |
} |
| 909 |
|
| 910 |
/** |
| 911 |
* The "operations" collection of methods. |
| 912 |
* Typical usage is: |
| 913 |
* <code> |
| 914 |
* $genomicsService = new Google_Service_Genomics(...); |
| 915 |
* $operations = $genomicsService->operations; |
| 916 |
* </code> |
| 917 |
*/ |
| 918 |
class Google_Service_Genomics_Operations_Resource extends Google_Service_Resource |
| 919 |
{ |
| 920 |
|
| 921 |
/** |
| 922 |
* Starts asynchronous cancellation on a long-running operation. The server |
| 923 |
* makes a best effort to cancel the operation, but success is not guaranteed. |
| 924 |
* Clients may use Operations.GetOperation or Operations.ListOperations to check |
| 925 |
* whether the cancellation succeeded or the operation completed despite |
| 926 |
* cancellation. (operations.cancel) |
| 927 |
* |
| 928 |
* @param string $name The name of the operation resource to be cancelled. |
| 929 |
* @param Google_CancelOperationRequest $postBody |
| 930 |
* @param array $optParams Optional parameters. |
| 931 |
* @return Google_Service_Genomics_Empty |
| 932 |
*/ |
| 933 |
public function cancel($name, Google_Service_Genomics_CancelOperationRequest $postBody, $optParams = array()) |
| 934 |
{ |
| 935 |
$params = array('name' => $name, 'postBody' => $postBody); |
| 936 |
$params = array_merge($params, $optParams); |
| 937 |
return $this->call('cancel', array($params), "Google_Service_Genomics_Empty"); |
| 938 |
} |
| 939 |
|
| 940 |
/** |
| 941 |
* Gets the latest state of a long-running operation. Clients can use this |
| 942 |
* method to poll the operation result at intervals as recommended by the API |
| 943 |
* service. (operations.get) |
| 944 |
* |
| 945 |
* @param string $name The name of the operation resource. |
| 946 |
* @param array $optParams Optional parameters. |
| 947 |
* @return Google_Service_Genomics_Operation |
| 948 |
*/ |
| 949 |
public function get($name, $optParams = array()) |
| 950 |
{ |
| 951 |
$params = array('name' => $name); |
| 952 |
$params = array_merge($params, $optParams); |
| 953 |
return $this->call('get', array($params), "Google_Service_Genomics_Operation"); |
| 954 |
} |
| 955 |
|
| 956 |
/** |
| 957 |
* Lists operations that match the specified filter in the request. |
| 958 |
* (operations.listOperations) |
| 959 |
* |
| 960 |
* @param string $name The name of the operation collection. |
| 961 |
* @param array $optParams Optional parameters. |
| 962 |
* |
| 963 |
* @opt_param string filter A string for filtering Operations. The following |
| 964 |
* filter fields are supported: * projectId: Required. Corresponds to |
| 965 |
* OperationMetadata.projectId. * createTime: The time this job was created, in |
| 966 |
* seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use |
| 967 |
* `>=` and/or `= 1432140000` * `projectId = my-project AND createTime >= |
| 968 |
* 1432140000 AND createTime <= 1432150000 AND status = RUNNING` |
| 969 |
* @opt_param int pageSize The maximum number of results to return. If |
| 970 |
* unspecified, defaults to 256. The maximum value is 2048. |
| 971 |
* @opt_param string pageToken The standard list page token. |
| 972 |
* @return Google_Service_Genomics_ListOperationsResponse |
| 973 |
*/ |
| 974 |
public function listOperations($name, $optParams = array()) |
| 975 |
{ |
| 976 |
$params = array('name' => $name); |
| 977 |
$params = array_merge($params, $optParams); |
| 978 |
return $this->call('list', array($params), "Google_Service_Genomics_ListOperationsResponse"); |
| 979 |
} |
| 980 |
} |
| 981 |
|
| 982 |
/** |
| 983 |
* The "readgroupsets" collection of methods. |
| 984 |
* Typical usage is: |
| 985 |
* <code> |
| 986 |
* $genomicsService = new Google_Service_Genomics(...); |
| 987 |
* $readgroupsets = $genomicsService->readgroupsets; |
| 988 |
* </code> |
| 989 |
*/ |
| 990 |
class Google_Service_Genomics_Readgroupsets_Resource extends Google_Service_Resource |
| 991 |
{ |
| 992 |
|
| 993 |
/** |
| 994 |
* Deletes a read group set. For the definitions of read group sets and other |
| 995 |
* genomics resources, see [Fundamentals of Google |
| 996 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 997 |
* (readgroupsets.delete) |
| 998 |
* |
| 999 |
* @param string $readGroupSetId The ID of the read group set to be deleted. The |
| 1000 |
* caller must have WRITE permissions to the dataset associated with this read |
| 1001 |
* group set. |
| 1002 |
* @param array $optParams Optional parameters. |
| 1003 |
* @return Google_Service_Genomics_Empty |
| 1004 |
*/ |
| 1005 |
public function delete($readGroupSetId, $optParams = array()) |
| 1006 |
{ |
| 1007 |
$params = array('readGroupSetId' => $readGroupSetId); |
| 1008 |
$params = array_merge($params, $optParams); |
| 1009 |
return $this->call('delete', array($params), "Google_Service_Genomics_Empty"); |
| 1010 |
} |
| 1011 |
|
| 1012 |
/** |
| 1013 |
* Exports a read group set to a BAM file in Google Cloud Storage. For the |
| 1014 |
* definitions of read group sets and other genomics resources, see |
| 1015 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 1016 |
* /fundamentals-of-google-genomics) Note that currently there may be some |
| 1017 |
* differences between exported BAM files and the original BAM file at the time |
| 1018 |
* of import. See |
| 1019 |
* [ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets) |
| 1020 |
* for caveats. (readgroupsets.export) |
| 1021 |
* |
| 1022 |
* @param string $readGroupSetId Required. The ID of the read group set to |
| 1023 |
* export. The caller must have READ access to this read group set. |
| 1024 |
* @param Google_ExportReadGroupSetRequest $postBody |
| 1025 |
* @param array $optParams Optional parameters. |
| 1026 |
* @return Google_Service_Genomics_Operation |
| 1027 |
*/ |
| 1028 |
public function export($readGroupSetId, Google_Service_Genomics_ExportReadGroupSetRequest $postBody, $optParams = array()) |
| 1029 |
{ |
| 1030 |
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody); |
| 1031 |
$params = array_merge($params, $optParams); |
| 1032 |
return $this->call('export', array($params), "Google_Service_Genomics_Operation"); |
| 1033 |
} |
| 1034 |
|
| 1035 |
/** |
| 1036 |
* Gets a read group set by ID. For the definitions of read group sets and other |
| 1037 |
* genomics resources, see [Fundamentals of Google |
| 1038 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1039 |
* (readgroupsets.get) |
| 1040 |
* |
| 1041 |
* @param string $readGroupSetId The ID of the read group set. |
| 1042 |
* @param array $optParams Optional parameters. |
| 1043 |
* @return Google_Service_Genomics_ReadGroupSet |
| 1044 |
*/ |
| 1045 |
public function get($readGroupSetId, $optParams = array()) |
| 1046 |
{ |
| 1047 |
$params = array('readGroupSetId' => $readGroupSetId); |
| 1048 |
$params = array_merge($params, $optParams); |
| 1049 |
return $this->call('get', array($params), "Google_Service_Genomics_ReadGroupSet"); |
| 1050 |
} |
| 1051 |
|
| 1052 |
/** |
| 1053 |
* Creates read group sets by asynchronously importing the provided information. |
| 1054 |
* For the definitions of read group sets and other genomics resources, see |
| 1055 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 1056 |
* /fundamentals-of-google-genomics) The caller must have WRITE permissions to |
| 1057 |
* the dataset. ## Notes on [BAM](https://samtools.github.io/hts- |
| 1058 |
* specs/SAMv1.pdf) import - Tags will be converted to strings - tag types are |
| 1059 |
* not preserved - Comments (`@CO`) in the input file header will not be |
| 1060 |
* preserved - Original header order of references (`@SQ`) will not be preserved |
| 1061 |
* - Any reverse stranded unmapped reads will be reverse complemented, and their |
| 1062 |
* qualities (also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped |
| 1063 |
* reads will be stripped of positional information (reference name and |
| 1064 |
* position) (readgroupsets.import) |
| 1065 |
* |
| 1066 |
* @param Google_ImportReadGroupSetsRequest $postBody |
| 1067 |
* @param array $optParams Optional parameters. |
| 1068 |
* @return Google_Service_Genomics_Operation |
| 1069 |
*/ |
| 1070 |
public function import(Google_Service_Genomics_ImportReadGroupSetsRequest $postBody, $optParams = array()) |
| 1071 |
{ |
| 1072 |
$params = array('postBody' => $postBody); |
| 1073 |
$params = array_merge($params, $optParams); |
| 1074 |
return $this->call('import', array($params), "Google_Service_Genomics_Operation"); |
| 1075 |
} |
| 1076 |
|
| 1077 |
/** |
| 1078 |
* Updates a read group set. For the definitions of read group sets and other |
| 1079 |
* genomics resources, see [Fundamentals of Google |
| 1080 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1081 |
* This method supports patch semantics. (readgroupsets.patch) |
| 1082 |
* |
| 1083 |
* @param string $readGroupSetId The ID of the read group set to be updated. The |
| 1084 |
* caller must have WRITE permissions to the dataset associated with this read |
| 1085 |
* group set. |
| 1086 |
* @param Google_ReadGroupSet $postBody |
| 1087 |
* @param array $optParams Optional parameters. |
| 1088 |
* |
| 1089 |
* @opt_param string updateMask An optional mask specifying which fields to |
| 1090 |
* update. Supported fields: * name. * referenceSetId. Leaving `updateMask` |
| 1091 |
* unset is equivalent to specifying all mutable fields. |
| 1092 |
* @return Google_Service_Genomics_ReadGroupSet |
| 1093 |
*/ |
| 1094 |
public function patch($readGroupSetId, Google_Service_Genomics_ReadGroupSet $postBody, $optParams = array()) |
| 1095 |
{ |
| 1096 |
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody); |
| 1097 |
$params = array_merge($params, $optParams); |
| 1098 |
return $this->call('patch', array($params), "Google_Service_Genomics_ReadGroupSet"); |
| 1099 |
} |
| 1100 |
|
| 1101 |
/** |
| 1102 |
* Searches for read group sets matching the criteria. For the definitions of |
| 1103 |
* read group sets and other genomics resources, see [Fundamentals of Google |
| 1104 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1105 |
* Implements [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/s |
| 1106 |
* chemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135). |
| 1107 |
* (readgroupsets.search) |
| 1108 |
* |
| 1109 |
* @param Google_SearchReadGroupSetsRequest $postBody |
| 1110 |
* @param array $optParams Optional parameters. |
| 1111 |
* @return Google_Service_Genomics_SearchReadGroupSetsResponse |
| 1112 |
*/ |
| 1113 |
public function search(Google_Service_Genomics_SearchReadGroupSetsRequest $postBody, $optParams = array()) |
| 1114 |
{ |
| 1115 |
$params = array('postBody' => $postBody); |
| 1116 |
$params = array_merge($params, $optParams); |
| 1117 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadGroupSetsResponse"); |
| 1118 |
} |
| 1119 |
} |
| 1120 |
|
| 1121 |
/** |
| 1122 |
* The "coveragebuckets" collection of methods. |
| 1123 |
* Typical usage is: |
| 1124 |
* <code> |
| 1125 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1126 |
* $coveragebuckets = $genomicsService->coveragebuckets; |
| 1127 |
* </code> |
| 1128 |
*/ |
| 1129 |
class Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource extends Google_Service_Resource |
| 1130 |
{ |
| 1131 |
|
| 1132 |
/** |
| 1133 |
* Lists fixed width coverage buckets for a read group set, each of which |
| 1134 |
* correspond to a range of a reference sequence. Each bucket summarizes |
| 1135 |
* coverage information across its corresponding genomic range. For the |
| 1136 |
* definitions of read group sets and other genomics resources, see |
| 1137 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 1138 |
* /fundamentals-of-google-genomics) Coverage is defined as the number of reads |
| 1139 |
* which are aligned to a given base in the reference sequence. Coverage buckets |
| 1140 |
* are available at several precomputed bucket widths, enabling retrieval of |
| 1141 |
* various coverage 'zoom levels'. The caller must have READ permissions for the |
| 1142 |
* target read group set. (coveragebuckets.listReadgroupsetsCoveragebuckets) |
| 1143 |
* |
| 1144 |
* @param string $readGroupSetId Required. The ID of the read group set over |
| 1145 |
* which coverage is requested. |
| 1146 |
* @param array $optParams Optional parameters. |
| 1147 |
* |
| 1148 |
* @opt_param string referenceName The name of the reference to query, within |
| 1149 |
* the reference set associated with this query. Optional. |
| 1150 |
* @opt_param string start The start position of the range on the reference, |
| 1151 |
* 0-based inclusive. If specified, `referenceName` must also be specified. |
| 1152 |
* Defaults to 0. |
| 1153 |
* @opt_param string end The end position of the range on the reference, 0-based |
| 1154 |
* exclusive. If specified, `referenceName` must also be specified. If unset or |
| 1155 |
* 0, defaults to the length of the reference. |
| 1156 |
* @opt_param string targetBucketWidth The desired width of each reported |
| 1157 |
* coverage bucket in base pairs. This will be rounded down to the nearest |
| 1158 |
* precomputed bucket width; the value of which is returned as `bucketWidth` in |
| 1159 |
* the response. Defaults to infinity (each bucket spans an entire reference |
| 1160 |
* sequence) or the length of the target range, if specified. The smallest |
| 1161 |
* precomputed `bucketWidth` is currently 2048 base pairs; this is subject to |
| 1162 |
* change. |
| 1163 |
* @opt_param string pageToken The continuation token, which is used to page |
| 1164 |
* through large result sets. To get the next page of results, set this |
| 1165 |
* parameter to the value of `nextPageToken` from the previous response. |
| 1166 |
* @opt_param int pageSize The maximum number of results to return in a single |
| 1167 |
* page. If unspecified, defaults to 1024. The maximum value is 2048. |
| 1168 |
* @return Google_Service_Genomics_ListCoverageBucketsResponse |
| 1169 |
*/ |
| 1170 |
public function listReadgroupsetsCoveragebuckets($readGroupSetId, $optParams = array()) |
| 1171 |
{ |
| 1172 |
$params = array('readGroupSetId' => $readGroupSetId); |
| 1173 |
$params = array_merge($params, $optParams); |
| 1174 |
return $this->call('list', array($params), "Google_Service_Genomics_ListCoverageBucketsResponse"); |
| 1175 |
} |
| 1176 |
} |
| 1177 |
|
| 1178 |
/** |
| 1179 |
* The "reads" collection of methods. |
| 1180 |
* Typical usage is: |
| 1181 |
* <code> |
| 1182 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1183 |
* $reads = $genomicsService->reads; |
| 1184 |
* </code> |
| 1185 |
*/ |
| 1186 |
class Google_Service_Genomics_Reads_Resource extends Google_Service_Resource |
| 1187 |
{ |
| 1188 |
|
| 1189 |
/** |
| 1190 |
* Gets a list of reads for one or more read group sets. For the definitions of |
| 1191 |
* read group sets and other genomics resources, see [Fundamentals of Google |
| 1192 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1193 |
* Reads search operates over a genomic coordinate space of reference sequence & |
| 1194 |
* position defined over the reference sequences to which the requested read |
| 1195 |
* group sets are aligned. If a target positional range is specified, search |
| 1196 |
* returns all reads whose alignment to the reference genome overlap the range. |
| 1197 |
* A query which specifies only read group set IDs yields all reads in those |
| 1198 |
* read group sets, including unmapped reads. All reads returned (including |
| 1199 |
* reads on subsequent pages) are ordered by genomic coordinate (by reference |
| 1200 |
* sequence, then position). Reads with equivalent genomic coordinates are |
| 1201 |
* returned in an unspecified order. This order is consistent, such that two |
| 1202 |
* queries for the same content (regardless of page size) yield reads in the |
| 1203 |
* same order across their respective streams of paginated responses. Implements |
| 1204 |
* [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/ |
| 1205 |
* src/main/resources/avro/readmethods.avdl#L85). (reads.search) |
| 1206 |
* |
| 1207 |
* @param Google_SearchReadsRequest $postBody |
| 1208 |
* @param array $optParams Optional parameters. |
| 1209 |
* @return Google_Service_Genomics_SearchReadsResponse |
| 1210 |
*/ |
| 1211 |
public function search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array()) |
| 1212 |
{ |
| 1213 |
$params = array('postBody' => $postBody); |
| 1214 |
$params = array_merge($params, $optParams); |
| 1215 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadsResponse"); |
| 1216 |
} |
| 1217 |
|
| 1218 |
/** |
| 1219 |
* Returns a stream of all the reads matching the search request, ordered by |
| 1220 |
* reference name, position, and ID. (reads.stream) |
| 1221 |
* |
| 1222 |
* @param Google_StreamReadsRequest $postBody |
| 1223 |
* @param array $optParams Optional parameters. |
| 1224 |
* @return Google_Service_Genomics_StreamReadsResponse |
| 1225 |
*/ |
| 1226 |
public function stream(Google_Service_Genomics_StreamReadsRequest $postBody, $optParams = array()) |
| 1227 |
{ |
| 1228 |
$params = array('postBody' => $postBody); |
| 1229 |
$params = array_merge($params, $optParams); |
| 1230 |
return $this->call('stream', array($params), "Google_Service_Genomics_StreamReadsResponse"); |
| 1231 |
} |
| 1232 |
} |
| 1233 |
|
| 1234 |
/** |
| 1235 |
* The "references" collection of methods. |
| 1236 |
* Typical usage is: |
| 1237 |
* <code> |
| 1238 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1239 |
* $references = $genomicsService->references; |
| 1240 |
* </code> |
| 1241 |
*/ |
| 1242 |
class Google_Service_Genomics_References_Resource extends Google_Service_Resource |
| 1243 |
{ |
| 1244 |
|
| 1245 |
/** |
| 1246 |
* Gets a reference. For the definitions of references and other genomics |
| 1247 |
* resources, see [Fundamentals of Google |
| 1248 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1249 |
* Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/ |
| 1250 |
* blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158). |
| 1251 |
* (references.get) |
| 1252 |
* |
| 1253 |
* @param string $referenceId The ID of the reference. |
| 1254 |
* @param array $optParams Optional parameters. |
| 1255 |
* @return Google_Service_Genomics_Reference |
| 1256 |
*/ |
| 1257 |
public function get($referenceId, $optParams = array()) |
| 1258 |
{ |
| 1259 |
$params = array('referenceId' => $referenceId); |
| 1260 |
$params = array_merge($params, $optParams); |
| 1261 |
return $this->call('get', array($params), "Google_Service_Genomics_Reference"); |
| 1262 |
} |
| 1263 |
|
| 1264 |
/** |
| 1265 |
* Searches for references which match the given criteria. For the definitions |
| 1266 |
* of references and other genomics resources, see [Fundamentals of Google |
| 1267 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1268 |
* Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/sche |
| 1269 |
* mas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146). |
| 1270 |
* (references.search) |
| 1271 |
* |
| 1272 |
* @param Google_SearchReferencesRequest $postBody |
| 1273 |
* @param array $optParams Optional parameters. |
| 1274 |
* @return Google_Service_Genomics_SearchReferencesResponse |
| 1275 |
*/ |
| 1276 |
public function search(Google_Service_Genomics_SearchReferencesRequest $postBody, $optParams = array()) |
| 1277 |
{ |
| 1278 |
$params = array('postBody' => $postBody); |
| 1279 |
$params = array_merge($params, $optParams); |
| 1280 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferencesResponse"); |
| 1281 |
} |
| 1282 |
} |
| 1283 |
|
| 1284 |
/** |
| 1285 |
* The "bases" collection of methods. |
| 1286 |
* Typical usage is: |
| 1287 |
* <code> |
| 1288 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1289 |
* $bases = $genomicsService->bases; |
| 1290 |
* </code> |
| 1291 |
*/ |
| 1292 |
class Google_Service_Genomics_ReferencesBases_Resource extends Google_Service_Resource |
| 1293 |
{ |
| 1294 |
|
| 1295 |
/** |
| 1296 |
* Lists the bases in a reference, optionally restricted to a range. For the |
| 1297 |
* definitions of references and other genomics resources, see [Fundamentals of |
| 1298 |
* Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google- |
| 1299 |
* genomics) Implements [GlobalAllianceApi.getReferenceBases](https://github.com |
| 1300 |
* /ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221 |
| 1301 |
* ). (bases.listReferencesBases) |
| 1302 |
* |
| 1303 |
* @param string $referenceId The ID of the reference. |
| 1304 |
* @param array $optParams Optional parameters. |
| 1305 |
* |
| 1306 |
* @opt_param string start The start position (0-based) of this query. Defaults |
| 1307 |
* to 0. |
| 1308 |
* @opt_param string end The end position (0-based, exclusive) of this query. |
| 1309 |
* Defaults to the length of this reference. |
| 1310 |
* @opt_param string pageToken The continuation token, which is used to page |
| 1311 |
* through large result sets. To get the next page of results, set this |
| 1312 |
* parameter to the value of `nextPageToken` from the previous response. |
| 1313 |
* @opt_param int pageSize The maximum number of bases to return in a single |
| 1314 |
* page. If unspecified, defaults to 200Kbp (kilo base pairs). The maximum value |
| 1315 |
* is 10Mbp (mega base pairs). |
| 1316 |
* @return Google_Service_Genomics_ListBasesResponse |
| 1317 |
*/ |
| 1318 |
public function listReferencesBases($referenceId, $optParams = array()) |
| 1319 |
{ |
| 1320 |
$params = array('referenceId' => $referenceId); |
| 1321 |
$params = array_merge($params, $optParams); |
| 1322 |
return $this->call('list', array($params), "Google_Service_Genomics_ListBasesResponse"); |
| 1323 |
} |
| 1324 |
} |
| 1325 |
|
| 1326 |
/** |
| 1327 |
* The "referencesets" collection of methods. |
| 1328 |
* Typical usage is: |
| 1329 |
* <code> |
| 1330 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1331 |
* $referencesets = $genomicsService->referencesets; |
| 1332 |
* </code> |
| 1333 |
*/ |
| 1334 |
class Google_Service_Genomics_Referencesets_Resource extends Google_Service_Resource |
| 1335 |
{ |
| 1336 |
|
| 1337 |
/** |
| 1338 |
* Gets a reference set. For the definitions of references and other genomics |
| 1339 |
* resources, see [Fundamentals of Google |
| 1340 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1341 |
* Implements [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schem |
| 1342 |
* as/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83). |
| 1343 |
* (referencesets.get) |
| 1344 |
* |
| 1345 |
* @param string $referenceSetId The ID of the reference set. |
| 1346 |
* @param array $optParams Optional parameters. |
| 1347 |
* @return Google_Service_Genomics_ReferenceSet |
| 1348 |
*/ |
| 1349 |
public function get($referenceSetId, $optParams = array()) |
| 1350 |
{ |
| 1351 |
$params = array('referenceSetId' => $referenceSetId); |
| 1352 |
$params = array_merge($params, $optParams); |
| 1353 |
return $this->call('get', array($params), "Google_Service_Genomics_ReferenceSet"); |
| 1354 |
} |
| 1355 |
|
| 1356 |
/** |
| 1357 |
* Searches for reference sets which match the given criteria. For the |
| 1358 |
* definitions of references and other genomics resources, see [Fundamentals of |
| 1359 |
* Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google- |
| 1360 |
* genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.c |
| 1361 |
* om/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L7 |
| 1362 |
* 1) (referencesets.search) |
| 1363 |
* |
| 1364 |
* @param Google_SearchReferenceSetsRequest $postBody |
| 1365 |
* @param array $optParams Optional parameters. |
| 1366 |
* @return Google_Service_Genomics_SearchReferenceSetsResponse |
| 1367 |
*/ |
| 1368 |
public function search(Google_Service_Genomics_SearchReferenceSetsRequest $postBody, $optParams = array()) |
| 1369 |
{ |
| 1370 |
$params = array('postBody' => $postBody); |
| 1371 |
$params = array_merge($params, $optParams); |
| 1372 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferenceSetsResponse"); |
| 1373 |
} |
| 1374 |
} |
| 1375 |
|
| 1376 |
/** |
| 1377 |
* The "variants" collection of methods. |
| 1378 |
* Typical usage is: |
| 1379 |
* <code> |
| 1380 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1381 |
* $variants = $genomicsService->variants; |
| 1382 |
* </code> |
| 1383 |
*/ |
| 1384 |
class Google_Service_Genomics_Variants_Resource extends Google_Service_Resource |
| 1385 |
{ |
| 1386 |
|
| 1387 |
/** |
| 1388 |
* Creates a new variant. For the definitions of variants and other genomics |
| 1389 |
* resources, see [Fundamentals of Google |
| 1390 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1391 |
* (variants.create) |
| 1392 |
* |
| 1393 |
* @param Google_Variant $postBody |
| 1394 |
* @param array $optParams Optional parameters. |
| 1395 |
* @return Google_Service_Genomics_Variant |
| 1396 |
*/ |
| 1397 |
public function create(Google_Service_Genomics_Variant $postBody, $optParams = array()) |
| 1398 |
{ |
| 1399 |
$params = array('postBody' => $postBody); |
| 1400 |
$params = array_merge($params, $optParams); |
| 1401 |
return $this->call('create', array($params), "Google_Service_Genomics_Variant"); |
| 1402 |
} |
| 1403 |
|
| 1404 |
/** |
| 1405 |
* Deletes a variant. For the definitions of variants and other genomics |
| 1406 |
* resources, see [Fundamentals of Google |
| 1407 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1408 |
* (variants.delete) |
| 1409 |
* |
| 1410 |
* @param string $variantId The ID of the variant to be deleted. |
| 1411 |
* @param array $optParams Optional parameters. |
| 1412 |
* @return Google_Service_Genomics_Empty |
| 1413 |
*/ |
| 1414 |
public function delete($variantId, $optParams = array()) |
| 1415 |
{ |
| 1416 |
$params = array('variantId' => $variantId); |
| 1417 |
$params = array_merge($params, $optParams); |
| 1418 |
return $this->call('delete', array($params), "Google_Service_Genomics_Empty"); |
| 1419 |
} |
| 1420 |
|
| 1421 |
/** |
| 1422 |
* Gets a variant by ID. For the definitions of variants and other genomics |
| 1423 |
* resources, see [Fundamentals of Google |
| 1424 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1425 |
* (variants.get) |
| 1426 |
* |
| 1427 |
* @param string $variantId The ID of the variant. |
| 1428 |
* @param array $optParams Optional parameters. |
| 1429 |
* @return Google_Service_Genomics_Variant |
| 1430 |
*/ |
| 1431 |
public function get($variantId, $optParams = array()) |
| 1432 |
{ |
| 1433 |
$params = array('variantId' => $variantId); |
| 1434 |
$params = array_merge($params, $optParams); |
| 1435 |
return $this->call('get', array($params), "Google_Service_Genomics_Variant"); |
| 1436 |
} |
| 1437 |
|
| 1438 |
/** |
| 1439 |
* Creates variant data by asynchronously importing the provided information. |
| 1440 |
* For the definitions of variant sets and other genomics resources, see |
| 1441 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 1442 |
* /fundamentals-of-google-genomics) The variants for import will be merged with |
| 1443 |
* any existing variant that matches its reference sequence, start, end, |
| 1444 |
* reference bases, and alternative bases. If no such variant exists, a new one |
| 1445 |
* will be created. When variants are merged, the call information from the new |
| 1446 |
* variant is added to the existing variant, and other fields (such as key/value |
| 1447 |
* pairs) are discarded. In particular, this means for merged VCF variants that |
| 1448 |
* have conflicting INFO fields, some data will be arbitrarily discarded. As a |
| 1449 |
* special case, for single-sample VCF files, QUAL and FILTER fields will be |
| 1450 |
* moved to the call level; these are sometimes interpreted in a call-specific |
| 1451 |
* context. Imported VCF headers are appended to the metadata already in a |
| 1452 |
* variant set. (variants.import) |
| 1453 |
* |
| 1454 |
* @param Google_ImportVariantsRequest $postBody |
| 1455 |
* @param array $optParams Optional parameters. |
| 1456 |
* @return Google_Service_Genomics_Operation |
| 1457 |
*/ |
| 1458 |
public function import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array()) |
| 1459 |
{ |
| 1460 |
$params = array('postBody' => $postBody); |
| 1461 |
$params = array_merge($params, $optParams); |
| 1462 |
return $this->call('import', array($params), "Google_Service_Genomics_Operation"); |
| 1463 |
} |
| 1464 |
|
| 1465 |
/** |
| 1466 |
* Updates a variant. For the definitions of variants and other genomics |
| 1467 |
* resources, see [Fundamentals of Google |
| 1468 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1469 |
* This method supports patch semantics. Returns the modified variant without |
| 1470 |
* its calls. (variants.patch) |
| 1471 |
* |
| 1472 |
* @param string $variantId The ID of the variant to be updated. |
| 1473 |
* @param Google_Variant $postBody |
| 1474 |
* @param array $optParams Optional parameters. |
| 1475 |
* |
| 1476 |
* @opt_param string updateMask An optional mask specifying which fields to |
| 1477 |
* update. At this time, mutable fields are names and info. Acceptable values |
| 1478 |
* are "names" and "info". If unspecified, all mutable fields will be updated. |
| 1479 |
* @return Google_Service_Genomics_Variant |
| 1480 |
*/ |
| 1481 |
public function patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array()) |
| 1482 |
{ |
| 1483 |
$params = array('variantId' => $variantId, 'postBody' => $postBody); |
| 1484 |
$params = array_merge($params, $optParams); |
| 1485 |
return $this->call('patch', array($params), "Google_Service_Genomics_Variant"); |
| 1486 |
} |
| 1487 |
|
| 1488 |
/** |
| 1489 |
* Gets a list of variants matching the criteria. For the definitions of |
| 1490 |
* variants and other genomics resources, see [Fundamentals of Google |
| 1491 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1492 |
* Implements [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schema |
| 1493 |
* s/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126). |
| 1494 |
* (variants.search) |
| 1495 |
* |
| 1496 |
* @param Google_SearchVariantsRequest $postBody |
| 1497 |
* @param array $optParams Optional parameters. |
| 1498 |
* @return Google_Service_Genomics_SearchVariantsResponse |
| 1499 |
*/ |
| 1500 |
public function search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array()) |
| 1501 |
{ |
| 1502 |
$params = array('postBody' => $postBody); |
| 1503 |
$params = array_merge($params, $optParams); |
| 1504 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantsResponse"); |
| 1505 |
} |
| 1506 |
|
| 1507 |
/** |
| 1508 |
* Returns a stream of all the variants matching the search request, ordered by |
| 1509 |
* reference name, position, and ID. (variants.stream) |
| 1510 |
* |
| 1511 |
* @param Google_StreamVariantsRequest $postBody |
| 1512 |
* @param array $optParams Optional parameters. |
| 1513 |
* @return Google_Service_Genomics_StreamVariantsResponse |
| 1514 |
*/ |
| 1515 |
public function stream(Google_Service_Genomics_StreamVariantsRequest $postBody, $optParams = array()) |
| 1516 |
{ |
| 1517 |
$params = array('postBody' => $postBody); |
| 1518 |
$params = array_merge($params, $optParams); |
| 1519 |
return $this->call('stream', array($params), "Google_Service_Genomics_StreamVariantsResponse"); |
| 1520 |
} |
| 1521 |
} |
| 1522 |
|
| 1523 |
/** |
| 1524 |
* The "variantsets" collection of methods. |
| 1525 |
* Typical usage is: |
| 1526 |
* <code> |
| 1527 |
* $genomicsService = new Google_Service_Genomics(...); |
| 1528 |
* $variantsets = $genomicsService->variantsets; |
| 1529 |
* </code> |
| 1530 |
*/ |
| 1531 |
class Google_Service_Genomics_Variantsets_Resource extends Google_Service_Resource |
| 1532 |
{ |
| 1533 |
|
| 1534 |
/** |
| 1535 |
* Creates a new variant set. For the definitions of variant sets and other |
| 1536 |
* genomics resources, see [Fundamentals of Google |
| 1537 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1538 |
* The provided variant set must have a valid `datasetId` set - all other fields |
| 1539 |
* are optional. Note that the `id` field will be ignored, as this is assigned |
| 1540 |
* by the server. (variantsets.create) |
| 1541 |
* |
| 1542 |
* @param Google_VariantSet $postBody |
| 1543 |
* @param array $optParams Optional parameters. |
| 1544 |
* @return Google_Service_Genomics_VariantSet |
| 1545 |
*/ |
| 1546 |
public function create(Google_Service_Genomics_VariantSet $postBody, $optParams = array()) |
| 1547 |
{ |
| 1548 |
$params = array('postBody' => $postBody); |
| 1549 |
$params = array_merge($params, $optParams); |
| 1550 |
return $this->call('create', array($params), "Google_Service_Genomics_VariantSet"); |
| 1551 |
} |
| 1552 |
|
| 1553 |
/** |
| 1554 |
* Deletes the contents of a variant set. The variant set object is not deleted. |
| 1555 |
* For the definitions of variant sets and other genomics resources, see |
| 1556 |
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics |
| 1557 |
* /fundamentals-of-google-genomics) (variantsets.delete) |
| 1558 |
* |
| 1559 |
* @param string $variantSetId The ID of the variant set to be deleted. |
| 1560 |
* @param array $optParams Optional parameters. |
| 1561 |
* @return Google_Service_Genomics_Empty |
| 1562 |
*/ |
| 1563 |
public function delete($variantSetId, $optParams = array()) |
| 1564 |
{ |
| 1565 |
$params = array('variantSetId' => $variantSetId); |
| 1566 |
$params = array_merge($params, $optParams); |
| 1567 |
return $this->call('delete', array($params), "Google_Service_Genomics_Empty"); |
| 1568 |
} |
| 1569 |
|
| 1570 |
/** |
| 1571 |
* Exports variant set data to an external destination. For the definitions of |
| 1572 |
* variant sets and other genomics resources, see [Fundamentals of Google |
| 1573 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1574 |
* (variantsets.export) |
| 1575 |
* |
| 1576 |
* @param string $variantSetId Required. The ID of the variant set that contains |
| 1577 |
* variant data which should be exported. The caller must have READ access to |
| 1578 |
* this variant set. |
| 1579 |
* @param Google_ExportVariantSetRequest $postBody |
| 1580 |
* @param array $optParams Optional parameters. |
| 1581 |
* @return Google_Service_Genomics_Operation |
| 1582 |
*/ |
| 1583 |
public function export($variantSetId, Google_Service_Genomics_ExportVariantSetRequest $postBody, $optParams = array()) |
| 1584 |
{ |
| 1585 |
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody); |
| 1586 |
$params = array_merge($params, $optParams); |
| 1587 |
return $this->call('export', array($params), "Google_Service_Genomics_Operation"); |
| 1588 |
} |
| 1589 |
|
| 1590 |
/** |
| 1591 |
* Gets a variant set by ID. For the definitions of variant sets and other |
| 1592 |
* genomics resources, see [Fundamentals of Google |
| 1593 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1594 |
* (variantsets.get) |
| 1595 |
* |
| 1596 |
* @param string $variantSetId Required. The ID of the variant set. |
| 1597 |
* @param array $optParams Optional parameters. |
| 1598 |
* @return Google_Service_Genomics_VariantSet |
| 1599 |
*/ |
| 1600 |
public function get($variantSetId, $optParams = array()) |
| 1601 |
{ |
| 1602 |
$params = array('variantSetId' => $variantSetId); |
| 1603 |
$params = array_merge($params, $optParams); |
| 1604 |
return $this->call('get', array($params), "Google_Service_Genomics_VariantSet"); |
| 1605 |
} |
| 1606 |
|
| 1607 |
/** |
| 1608 |
* Updates a variant set using patch semantics. For the definitions of variant |
| 1609 |
* sets and other genomics resources, see [Fundamentals of Google |
| 1610 |
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) |
| 1611 |
* (variantsets.patch) |
| 1612 |
* |
| 1613 |
* @param string $variantSetId The ID of the variant to be updated (must already |
| 1614 |
* exist). |
| 1615 |
* @param Google_VariantSet $postBody |
| 1616 |
* @param array $optParams Optional parameters. |
| 1617 |
* |
| 1618 |
* @opt_param string updateMask An optional mask specifying which fields to |
| 1619 |
* update. Supported fields: * metadata. Leaving `updateMask` unset is |
| 1620 |
* equivalent to specifying all mutable fields. |
| 1621 |
* @return Google_Service_Genomics_VariantSet |
| 1622 |
*/ |
| 1623 |
public function patch($variantSetId, Google_Service_Genomics_VariantSet $postBody, $optParams = array()) |
| 1624 |
{ |
| 1625 |
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody); |
| 1626 |
$params = array_merge($params, $optParams); |
| 1627 |
return $this->call('patch', array($params), "Google_Service_Genomics_VariantSet"); |
| 1628 |
} |
| 1629 |
|
| 1630 |
/** |
| 1631 |
* Returns a list of all variant sets matching search criteria. For the |
| 1632 |
* definitions of variant sets and other genomics resources, see [Fundamentals |
| 1633 |
* of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google- |
| 1634 |
* genomics) Implements [GlobalAllianceApi.searchVariantSets](https://github.com |
| 1635 |
* /ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49). |
| 1636 |
* (variantsets.search) |
| 1637 |
* |
| 1638 |
* @param Google_SearchVariantSetsRequest $postBody |
| 1639 |
* @param array $optParams Optional parameters. |
| 1640 |
* @return Google_Service_Genomics_SearchVariantSetsResponse |
| 1641 |
*/ |
| 1642 |
public function search(Google_Service_Genomics_SearchVariantSetsRequest $postBody, $optParams = array()) |
| 1643 |
{ |
| 1644 |
$params = array('postBody' => $postBody); |
| 1645 |
$params = array_merge($params, $optParams); |
| 1646 |
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantSetsResponse"); |
| 1647 |
} |
| 1648 |
} |
| 1649 |
|
| 1650 |
|
| 1651 |
|
| 1652 |
|
| 1653 |
class Google_Service_Genomics_Binding extends Google_Collection |
| 1654 |
{ |
| 1655 |
protected $collection_key = 'members'; |
| 1656 |
protected $internal_gapi_mappings = array( |
| 1657 |
); |
| 1658 |
public $members; |
| 1659 |
public $role; |
| 1660 |
|
| 1661 |
|
| 1662 |
public function setMembers($members) |
| 1663 |
{ |
| 1664 |
$this->members = $members; |
| 1665 |
} |
| 1666 |
public function getMembers() |
| 1667 |
{ |
| 1668 |
return $this->members; |
| 1669 |
} |
| 1670 |
public function setRole($role) |
| 1671 |
{ |
| 1672 |
$this->role = $role; |
| 1673 |
} |
| 1674 |
public function getRole() |
| 1675 |
{ |
| 1676 |
return $this->role; |
| 1677 |
} |
| 1678 |
} |
| 1679 |
|
| 1680 |
class Google_Service_Genomics_CallSet extends Google_Collection |
| 1681 |
{ |
| 1682 |
protected $collection_key = 'variantSetIds'; |
| 1683 |
protected $internal_gapi_mappings = array( |
| 1684 |
); |
| 1685 |
public $created; |
| 1686 |
public $id; |
| 1687 |
public $info; |
| 1688 |
public $name; |
| 1689 |
public $sampleId; |
| 1690 |
public $variantSetIds; |
| 1691 |
|
| 1692 |
|
| 1693 |
public function setCreated($created) |
| 1694 |
{ |
| 1695 |
$this->created = $created; |
| 1696 |
} |
| 1697 |
public function getCreated() |
| 1698 |
{ |
| 1699 |
return $this->created; |
| 1700 |
} |
| 1701 |
public function setId($id) |
| 1702 |
{ |
| 1703 |
$this->id = $id; |
| 1704 |
} |
| 1705 |
public function getId() |
| 1706 |
{ |
| 1707 |
return $this->id; |
| 1708 |
} |
| 1709 |
public function setInfo($info) |
| 1710 |
{ |
| 1711 |
$this->info = $info; |
| 1712 |
} |
| 1713 |
public function getInfo() |
| 1714 |
{ |
| 1715 |
return $this->info; |
| 1716 |
} |
| 1717 |
public function setName($name) |
| 1718 |
{ |
| 1719 |
$this->name = $name; |
| 1720 |
} |
| 1721 |
public function getName() |
| 1722 |
{ |
| 1723 |
return $this->name; |
| 1724 |
} |
| 1725 |
public function setSampleId($sampleId) |
| 1726 |
{ |
| 1727 |
$this->sampleId = $sampleId; |
| 1728 |
} |
| 1729 |
public function getSampleId() |
| 1730 |
{ |
| 1731 |
return $this->sampleId; |
| 1732 |
} |
| 1733 |
public function setVariantSetIds($variantSetIds) |
| 1734 |
{ |
| 1735 |
$this->variantSetIds = $variantSetIds; |
| 1736 |
} |
| 1737 |
public function getVariantSetIds() |
| 1738 |
{ |
| 1739 |
return $this->variantSetIds; |
| 1740 |
} |
| 1741 |
} |
| 1742 |
|
| 1743 |
class Google_Service_Genomics_CancelOperationRequest extends Google_Model |
| 1744 |
{ |
| 1745 |
} |
| 1746 |
|
| 1747 |
class Google_Service_Genomics_CigarUnit extends Google_Model |
| 1748 |
{ |
| 1749 |
protected $internal_gapi_mappings = array( |
| 1750 |
); |
| 1751 |
public $operation; |
| 1752 |
public $operationLength; |
| 1753 |
public $referenceSequence; |
| 1754 |
|
| 1755 |
|
| 1756 |
public function setOperation($operation) |
| 1757 |
{ |
| 1758 |
$this->operation = $operation; |
| 1759 |
} |
| 1760 |
public function getOperation() |
| 1761 |
{ |
| 1762 |
return $this->operation; |
| 1763 |
} |
| 1764 |
public function setOperationLength($operationLength) |
| 1765 |
{ |
| 1766 |
$this->operationLength = $operationLength; |
| 1767 |
} |
| 1768 |
public function getOperationLength() |
| 1769 |
{ |
| 1770 |
return $this->operationLength; |
| 1771 |
} |
| 1772 |
public function setReferenceSequence($referenceSequence) |
| 1773 |
{ |
| 1774 |
$this->referenceSequence = $referenceSequence; |
| 1775 |
} |
| 1776 |
public function getReferenceSequence() |
| 1777 |
{ |
| 1778 |
return $this->referenceSequence; |
| 1779 |
} |
| 1780 |
} |
| 1781 |
|
| 1782 |
class Google_Service_Genomics_CloudAuditOptions extends Google_Model |
| 1783 |
{ |
| 1784 |
} |
| 1785 |
|
| 1786 |
class Google_Service_Genomics_Condition extends Google_Collection |
| 1787 |
{ |
| 1788 |
protected $collection_key = 'values'; |
| 1789 |
protected $internal_gapi_mappings = array( |
| 1790 |
); |
| 1791 |
public $iam; |
| 1792 |
public $op; |
| 1793 |
public $svc; |
| 1794 |
public $sys; |
| 1795 |
public $value; |
| 1796 |
public $values; |
| 1797 |
|
| 1798 |
|
| 1799 |
public function setIam($iam) |
| 1800 |
{ |
| 1801 |
$this->iam = $iam; |
| 1802 |
} |
| 1803 |
public function getIam() |
| 1804 |
{ |
| 1805 |
return $this->iam; |
| 1806 |
} |
| 1807 |
public function setOp($op) |
| 1808 |
{ |
| 1809 |
$this->op = $op; |
| 1810 |
} |
| 1811 |
public function getOp() |
| 1812 |
{ |
| 1813 |
return $this->op; |
| 1814 |
} |
| 1815 |
public function setSvc($svc) |
| 1816 |
{ |
| 1817 |
$this->svc = $svc; |
| 1818 |
} |
| 1819 |
public function getSvc() |
| 1820 |
{ |
| 1821 |
return $this->svc; |
| 1822 |
} |
| 1823 |
public function setSys($sys) |
| 1824 |
{ |
| 1825 |
$this->sys = $sys; |
| 1826 |
} |
| 1827 |
public function getSys() |
| 1828 |
{ |
| 1829 |
return $this->sys; |
| 1830 |
} |
| 1831 |
public function setValue($value) |
| 1832 |
{ |
| 1833 |
$this->value = $value; |
| 1834 |
} |
| 1835 |
public function getValue() |
| 1836 |
{ |
| 1837 |
return $this->value; |
| 1838 |
} |
| 1839 |
public function setValues($values) |
| 1840 |
{ |
| 1841 |
$this->values = $values; |
| 1842 |
} |
| 1843 |
public function getValues() |
| 1844 |
{ |
| 1845 |
return $this->values; |
| 1846 |
} |
| 1847 |
} |
| 1848 |
|
| 1849 |
class Google_Service_Genomics_CounterOptions extends Google_Model |
| 1850 |
{ |
| 1851 |
protected $internal_gapi_mappings = array( |
| 1852 |
); |
| 1853 |
public $field; |
| 1854 |
public $metric; |
| 1855 |
|
| 1856 |
|
| 1857 |
public function setField($field) |
| 1858 |
{ |
| 1859 |
$this->field = $field; |
| 1860 |
} |
| 1861 |
public function getField() |
| 1862 |
{ |
| 1863 |
return $this->field; |
| 1864 |
} |
| 1865 |
public function setMetric($metric) |
| 1866 |
{ |
| 1867 |
$this->metric = $metric; |
| 1868 |
} |
| 1869 |
public function getMetric() |
| 1870 |
{ |
| 1871 |
return $this->metric; |
| 1872 |
} |
| 1873 |
} |
| 1874 |
|
| 1875 |
class Google_Service_Genomics_CoverageBucket extends Google_Model |
| 1876 |
{ |
| 1877 |
protected $internal_gapi_mappings = array( |
| 1878 |
); |
| 1879 |
public $meanCoverage; |
| 1880 |
protected $rangeType = 'Google_Service_Genomics_Range'; |
| 1881 |
protected $rangeDataType = ''; |
| 1882 |
|
| 1883 |
|
| 1884 |
public function setMeanCoverage($meanCoverage) |
| 1885 |
{ |
| 1886 |
$this->meanCoverage = $meanCoverage; |
| 1887 |
} |
| 1888 |
public function getMeanCoverage() |
| 1889 |
{ |
| 1890 |
return $this->meanCoverage; |
| 1891 |
} |
| 1892 |
public function setRange(Google_Service_Genomics_Range $range) |
| 1893 |
{ |
| 1894 |
$this->range = $range; |
| 1895 |
} |
| 1896 |
public function getRange() |
| 1897 |
{ |
| 1898 |
return $this->range; |
| 1899 |
} |
| 1900 |
} |
| 1901 |
|
| 1902 |
class Google_Service_Genomics_DataAccessOptions extends Google_Model |
| 1903 |
{ |
| 1904 |
} |
| 1905 |
|
| 1906 |
class Google_Service_Genomics_Dataset extends Google_Model |
| 1907 |
{ |
| 1908 |
protected $internal_gapi_mappings = array( |
| 1909 |
); |
| 1910 |
public $createTime; |
| 1911 |
public $id; |
| 1912 |
public $name; |
| 1913 |
public $projectId; |
| 1914 |
|
| 1915 |
|
| 1916 |
public function setCreateTime($createTime) |
| 1917 |
{ |
| 1918 |
$this->createTime = $createTime; |
| 1919 |
} |
| 1920 |
public function getCreateTime() |
| 1921 |
{ |
| 1922 |
return $this->createTime; |
| 1923 |
} |
| 1924 |
public function setId($id) |
| 1925 |
{ |
| 1926 |
$this->id = $id; |
| 1927 |
} |
| 1928 |
public function getId() |
| 1929 |
{ |
| 1930 |
return $this->id; |
| 1931 |
} |
| 1932 |
public function setName($name) |
| 1933 |
{ |
| 1934 |
$this->name = $name; |
| 1935 |
} |
| 1936 |
public function getName() |
| 1937 |
{ |
| 1938 |
return $this->name; |
| 1939 |
} |
| 1940 |
public function setProjectId($projectId) |
| 1941 |
{ |
| 1942 |
$this->projectId = $projectId; |
| 1943 |
} |
| 1944 |
public function getProjectId() |
| 1945 |
{ |
| 1946 |
return $this->projectId; |
| 1947 |
} |
| 1948 |
} |
| 1949 |
|
| 1950 |
class Google_Service_Genomics_Empty extends Google_Model |
| 1951 |
{ |
| 1952 |
} |
| 1953 |
|
| 1954 |
class Google_Service_Genomics_Experiment extends Google_Model |
| 1955 |
{ |
| 1956 |
protected $internal_gapi_mappings = array( |
| 1957 |
); |
| 1958 |
public $instrumentModel; |
| 1959 |
public $libraryId; |
| 1960 |
public $platformUnit; |
| 1961 |
public $sequencingCenter; |
| 1962 |
|
| 1963 |
|
| 1964 |
public function setInstrumentModel($instrumentModel) |
| 1965 |
{ |
| 1966 |
$this->instrumentModel = $instrumentModel; |
| 1967 |
} |
| 1968 |
public function getInstrumentModel() |
| 1969 |
{ |
| 1970 |
return $this->instrumentModel; |
| 1971 |
} |
| 1972 |
public function setLibraryId($libraryId) |
| 1973 |
{ |
| 1974 |
$this->libraryId = $libraryId; |
| 1975 |
} |
| 1976 |
public function getLibraryId() |
| 1977 |
{ |
| 1978 |
return $this->libraryId; |
| 1979 |
} |
| 1980 |
public function setPlatformUnit($platformUnit) |
| 1981 |
{ |
| 1982 |
$this->platformUnit = $platformUnit; |
| 1983 |
} |
| 1984 |
public function getPlatformUnit() |
| 1985 |
{ |
| 1986 |
return $this->platformUnit; |
| 1987 |
} |
| 1988 |
public function setSequencingCenter($sequencingCenter) |
| 1989 |
{ |
| 1990 |
$this->sequencingCenter = $sequencingCenter; |
| 1991 |
} |
| 1992 |
public function getSequencingCenter() |
| 1993 |
{ |
| 1994 |
return $this->sequencingCenter; |
| 1995 |
} |
| 1996 |
} |
| 1997 |
|
| 1998 |
class Google_Service_Genomics_ExportReadGroupSetRequest extends Google_Collection |
| 1999 |
{ |
| 2000 |
protected $collection_key = 'referenceNames'; |
| 2001 |
protected $internal_gapi_mappings = array( |
| 2002 |
); |
| 2003 |
public $exportUri; |
| 2004 |
public $projectId; |
| 2005 |
public $referenceNames; |
| 2006 |
|
| 2007 |
|
| 2008 |
public function setExportUri($exportUri) |
| 2009 |
{ |
| 2010 |
$this->exportUri = $exportUri; |
| 2011 |
} |
| 2012 |
public function getExportUri() |
| 2013 |
{ |
| 2014 |
return $this->exportUri; |
| 2015 |
} |
| 2016 |
public function setProjectId($projectId) |
| 2017 |
{ |
| 2018 |
$this->projectId = $projectId; |
| 2019 |
} |
| 2020 |
public function getProjectId() |
| 2021 |
{ |
| 2022 |
return $this->projectId; |
| 2023 |
} |
| 2024 |
public function setReferenceNames($referenceNames) |
| 2025 |
{ |
| 2026 |
$this->referenceNames = $referenceNames; |
| 2027 |
} |
| 2028 |
public function getReferenceNames() |
| 2029 |
{ |
| 2030 |
return $this->referenceNames; |
| 2031 |
} |
| 2032 |
} |
| 2033 |
|
| 2034 |
class Google_Service_Genomics_ExportVariantSetRequest extends Google_Collection |
| 2035 |
{ |
| 2036 |
protected $collection_key = 'callSetIds'; |
| 2037 |
protected $internal_gapi_mappings = array( |
| 2038 |
); |
| 2039 |
public $bigqueryDataset; |
| 2040 |
public $bigqueryTable; |
| 2041 |
public $callSetIds; |
| 2042 |
public $format; |
| 2043 |
public $projectId; |
| 2044 |
|
| 2045 |
|
| 2046 |
public function setBigqueryDataset($bigqueryDataset) |
| 2047 |
{ |
| 2048 |
$this->bigqueryDataset = $bigqueryDataset; |
| 2049 |
} |
| 2050 |
public function getBigqueryDataset() |
| 2051 |
{ |
| 2052 |
return $this->bigqueryDataset; |
| 2053 |
} |
| 2054 |
public function setBigqueryTable($bigqueryTable) |
| 2055 |
{ |
| 2056 |
$this->bigqueryTable = $bigqueryTable; |
| 2057 |
} |
| 2058 |
public function getBigqueryTable() |
| 2059 |
{ |
| 2060 |
return $this->bigqueryTable; |
| 2061 |
} |
| 2062 |
public function setCallSetIds($callSetIds) |
| 2063 |
{ |
| 2064 |
$this->callSetIds = $callSetIds; |
| 2065 |
} |
| 2066 |
public function getCallSetIds() |
| 2067 |
{ |
| 2068 |
return $this->callSetIds; |
| 2069 |
} |
| 2070 |
public function setFormat($format) |
| 2071 |
{ |
| 2072 |
$this->format = $format; |
| 2073 |
} |
| 2074 |
public function getFormat() |
| 2075 |
{ |
| 2076 |
return $this->format; |
| 2077 |
} |
| 2078 |
public function setProjectId($projectId) |
| 2079 |
{ |
| 2080 |
$this->projectId = $projectId; |
| 2081 |
} |
| 2082 |
public function getProjectId() |
| 2083 |
{ |
| 2084 |
return $this->projectId; |
| 2085 |
} |
| 2086 |
} |
| 2087 |
|
| 2088 |
class Google_Service_Genomics_GetIamPolicyRequest extends Google_Model |
| 2089 |
{ |
| 2090 |
} |
| 2091 |
|
| 2092 |
class Google_Service_Genomics_ImportReadGroupSetsRequest extends Google_Collection |
| 2093 |
{ |
| 2094 |
protected $collection_key = 'sourceUris'; |
| 2095 |
protected $internal_gapi_mappings = array( |
| 2096 |
); |
| 2097 |
public $datasetId; |
| 2098 |
public $partitionStrategy; |
| 2099 |
public $referenceSetId; |
| 2100 |
public $sourceUris; |
| 2101 |
|
| 2102 |
|
| 2103 |
public function setDatasetId($datasetId) |
| 2104 |
{ |
| 2105 |
$this->datasetId = $datasetId; |
| 2106 |
} |
| 2107 |
public function getDatasetId() |
| 2108 |
{ |
| 2109 |
return $this->datasetId; |
| 2110 |
} |
| 2111 |
public function setPartitionStrategy($partitionStrategy) |
| 2112 |
{ |
| 2113 |
$this->partitionStrategy = $partitionStrategy; |
| 2114 |
} |
| 2115 |
public function getPartitionStrategy() |
| 2116 |
{ |
| 2117 |
return $this->partitionStrategy; |
| 2118 |
} |
| 2119 |
public function setReferenceSetId($referenceSetId) |
| 2120 |
{ |
| 2121 |
$this->referenceSetId = $referenceSetId; |
| 2122 |
} |
| 2123 |
public function getReferenceSetId() |
| 2124 |
{ |
| 2125 |
return $this->referenceSetId; |
| 2126 |
} |
| 2127 |
public function setSourceUris($sourceUris) |
| 2128 |
{ |
| 2129 |
$this->sourceUris = $sourceUris; |
| 2130 |
} |
| 2131 |
public function getSourceUris() |
| 2132 |
{ |
| 2133 |
return $this->sourceUris; |
| 2134 |
} |
| 2135 |
} |
| 2136 |
|
| 2137 |
class Google_Service_Genomics_ImportReadGroupSetsResponse extends Google_Collection |
| 2138 |
{ |
| 2139 |
protected $collection_key = 'readGroupSetIds'; |
| 2140 |
protected $internal_gapi_mappings = array( |
| 2141 |
); |
| 2142 |
public $readGroupSetIds; |
| 2143 |
|
| 2144 |
|
| 2145 |
public function setReadGroupSetIds($readGroupSetIds) |
| 2146 |
{ |
| 2147 |
$this->readGroupSetIds = $readGroupSetIds; |
| 2148 |
} |
| 2149 |
public function getReadGroupSetIds() |
| 2150 |
{ |
| 2151 |
return $this->readGroupSetIds; |
| 2152 |
} |
| 2153 |
} |
| 2154 |
|
| 2155 |
class Google_Service_Genomics_ImportVariantsRequest extends Google_Collection |
| 2156 |
{ |
| 2157 |
protected $collection_key = 'sourceUris'; |
| 2158 |
protected $internal_gapi_mappings = array( |
| 2159 |
); |
| 2160 |
public $format; |
| 2161 |
public $normalizeReferenceNames; |
| 2162 |
public $sourceUris; |
| 2163 |
public $variantSetId; |
| 2164 |
|
| 2165 |
|
| 2166 |
public function setFormat($format) |
| 2167 |
{ |
| 2168 |
$this->format = $format; |
| 2169 |
} |
| 2170 |
public function getFormat() |
| 2171 |
{ |
| 2172 |
return $this->format; |
| 2173 |
} |
| 2174 |
public function setNormalizeReferenceNames($normalizeReferenceNames) |
| 2175 |
{ |
| 2176 |
$this->normalizeReferenceNames = $normalizeReferenceNames; |
| 2177 |
} |
| 2178 |
public function getNormalizeReferenceNames() |
| 2179 |
{ |
| 2180 |
return $this->normalizeReferenceNames; |
| 2181 |
} |
| 2182 |
public function setSourceUris($sourceUris) |
| 2183 |
{ |
| 2184 |
$this->sourceUris = $sourceUris; |
| 2185 |
} |
| 2186 |
public function getSourceUris() |
| 2187 |
{ |
| 2188 |
return $this->sourceUris; |
| 2189 |
} |
| 2190 |
public function setVariantSetId($variantSetId) |
| 2191 |
{ |
| 2192 |
$this->variantSetId = $variantSetId; |
| 2193 |
} |
| 2194 |
public function getVariantSetId() |
| 2195 |
{ |
| 2196 |
return $this->variantSetId; |
| 2197 |
} |
| 2198 |
} |
| 2199 |
|
| 2200 |
class Google_Service_Genomics_ImportVariantsResponse extends Google_Collection |
| 2201 |
{ |
| 2202 |
protected $collection_key = 'callSetIds'; |
| 2203 |
protected $internal_gapi_mappings = array( |
| 2204 |
); |
| 2205 |
public $callSetIds; |
| 2206 |
|
| 2207 |
|
| 2208 |
public function setCallSetIds($callSetIds) |
| 2209 |
{ |
| 2210 |
$this->callSetIds = $callSetIds; |
| 2211 |
} |
| 2212 |
public function getCallSetIds() |
| 2213 |
{ |
| 2214 |
return $this->callSetIds; |
| 2215 |
} |
| 2216 |
} |
| 2217 |
|
| 2218 |
class Google_Service_Genomics_LinearAlignment extends Google_Collection |
| 2219 |
{ |
| 2220 |
protected $collection_key = 'cigar'; |
| 2221 |
protected $internal_gapi_mappings = array( |
| 2222 |
); |
| 2223 |
protected $cigarType = 'Google_Service_Genomics_CigarUnit'; |
| 2224 |
protected $cigarDataType = 'array'; |
| 2225 |
public $mappingQuality; |
| 2226 |
protected $positionType = 'Google_Service_Genomics_Position'; |
| 2227 |
protected $positionDataType = ''; |
| 2228 |
|
| 2229 |
|
| 2230 |
public function setCigar($cigar) |
| 2231 |
{ |
| 2232 |
$this->cigar = $cigar; |
| 2233 |
} |
| 2234 |
public function getCigar() |
| 2235 |
{ |
| 2236 |
return $this->cigar; |
| 2237 |
} |
| 2238 |
public function setMappingQuality($mappingQuality) |
| 2239 |
{ |
| 2240 |
$this->mappingQuality = $mappingQuality; |
| 2241 |
} |
| 2242 |
public function getMappingQuality() |
| 2243 |
{ |
| 2244 |
return $this->mappingQuality; |
| 2245 |
} |
| 2246 |
public function setPosition(Google_Service_Genomics_Position $position) |
| 2247 |
{ |
| 2248 |
$this->position = $position; |
| 2249 |
} |
| 2250 |
public function getPosition() |
| 2251 |
{ |
| 2252 |
return $this->position; |
| 2253 |
} |
| 2254 |
} |
| 2255 |
|
| 2256 |
class Google_Service_Genomics_ListBasesResponse extends Google_Model |
| 2257 |
{ |
| 2258 |
protected $internal_gapi_mappings = array( |
| 2259 |
); |
| 2260 |
public $nextPageToken; |
| 2261 |
public $offset; |
| 2262 |
public $sequence; |
| 2263 |
|
| 2264 |
|
| 2265 |
public function setNextPageToken($nextPageToken) |
| 2266 |
{ |
| 2267 |
$this->nextPageToken = $nextPageToken; |
| 2268 |
} |
| 2269 |
public function getNextPageToken() |
| 2270 |
{ |
| 2271 |
return $this->nextPageToken; |
| 2272 |
} |
| 2273 |
public function setOffset($offset) |
| 2274 |
{ |
| 2275 |
$this->offset = $offset; |
| 2276 |
} |
| 2277 |
public function getOffset() |
| 2278 |
{ |
| 2279 |
return $this->offset; |
| 2280 |
} |
| 2281 |
public function setSequence($sequence) |
| 2282 |
{ |
| 2283 |
$this->sequence = $sequence; |
| 2284 |
} |
| 2285 |
public function getSequence() |
| 2286 |
{ |
| 2287 |
return $this->sequence; |
| 2288 |
} |
| 2289 |
} |
| 2290 |
|
| 2291 |
class Google_Service_Genomics_ListCoverageBucketsResponse extends Google_Collection |
| 2292 |
{ |
| 2293 |
protected $collection_key = 'coverageBuckets'; |
| 2294 |
protected $internal_gapi_mappings = array( |
| 2295 |
); |
| 2296 |
public $bucketWidth; |
| 2297 |
protected $coverageBucketsType = 'Google_Service_Genomics_CoverageBucket'; |
| 2298 |
protected $coverageBucketsDataType = 'array'; |
| 2299 |
public $nextPageToken; |
| 2300 |
|
| 2301 |
|
| 2302 |
public function setBucketWidth($bucketWidth) |
| 2303 |
{ |
| 2304 |
$this->bucketWidth = $bucketWidth; |
| 2305 |
} |
| 2306 |
public function getBucketWidth() |
| 2307 |
{ |
| 2308 |
return $this->bucketWidth; |
| 2309 |
} |
| 2310 |
public function setCoverageBuckets($coverageBuckets) |
| 2311 |
{ |
| 2312 |
$this->coverageBuckets = $coverageBuckets; |
| 2313 |
} |
| 2314 |
public function getCoverageBuckets() |
| 2315 |
{ |
| 2316 |
return $this->coverageBuckets; |
| 2317 |
} |
| 2318 |
public function setNextPageToken($nextPageToken) |
| 2319 |
{ |
| 2320 |
$this->nextPageToken = $nextPageToken; |
| 2321 |
} |
| 2322 |
public function getNextPageToken() |
| 2323 |
{ |
| 2324 |
return $this->nextPageToken; |
| 2325 |
} |
| 2326 |
} |
| 2327 |
|
| 2328 |
class Google_Service_Genomics_ListDatasetsResponse extends Google_Collection |
| 2329 |
{ |
| 2330 |
protected $collection_key = 'datasets'; |
| 2331 |
protected $internal_gapi_mappings = array( |
| 2332 |
); |
| 2333 |
protected $datasetsType = 'Google_Service_Genomics_Dataset'; |
| 2334 |
protected $datasetsDataType = 'array'; |
| 2335 |
public $nextPageToken; |
| 2336 |
|
| 2337 |
|
| 2338 |
public function setDatasets($datasets) |
| 2339 |
{ |
| 2340 |
$this->datasets = $datasets; |
| 2341 |
} |
| 2342 |
public function getDatasets() |
| 2343 |
{ |
| 2344 |
return $this->datasets; |
| 2345 |
} |
| 2346 |
public function setNextPageToken($nextPageToken) |
| 2347 |
{ |
| 2348 |
$this->nextPageToken = $nextPageToken; |
| 2349 |
} |
| 2350 |
public function getNextPageToken() |
| 2351 |
{ |
| 2352 |
return $this->nextPageToken; |
| 2353 |
} |
| 2354 |
} |
| 2355 |
|
| 2356 |
class Google_Service_Genomics_ListOperationsResponse extends Google_Collection |
| 2357 |
{ |
| 2358 |
protected $collection_key = 'operations'; |
| 2359 |
protected $internal_gapi_mappings = array( |
| 2360 |
); |
| 2361 |
public $nextPageToken; |
| 2362 |
protected $operationsType = 'Google_Service_Genomics_Operation'; |
| 2363 |
protected $operationsDataType = 'array'; |
| 2364 |
|
| 2365 |
|
| 2366 |
public function setNextPageToken($nextPageToken) |
| 2367 |
{ |
| 2368 |
$this->nextPageToken = $nextPageToken; |
| 2369 |
} |
| 2370 |
public function getNextPageToken() |
| 2371 |
{ |
| 2372 |
return $this->nextPageToken; |
| 2373 |
} |
| 2374 |
public function setOperations($operations) |
| 2375 |
{ |
| 2376 |
$this->operations = $operations; |
| 2377 |
} |
| 2378 |
public function getOperations() |
| 2379 |
{ |
| 2380 |
return $this->operations; |
| 2381 |
} |
| 2382 |
} |
| 2383 |
|
| 2384 |
class Google_Service_Genomics_LogConfig extends Google_Model |
| 2385 |
{ |
| 2386 |
protected $internal_gapi_mappings = array( |
| 2387 |
); |
| 2388 |
protected $cloudAuditType = 'Google_Service_Genomics_CloudAuditOptions'; |
| 2389 |
protected $cloudAuditDataType = ''; |
| 2390 |
protected $counterType = 'Google_Service_Genomics_CounterOptions'; |
| 2391 |
protected $counterDataType = ''; |
| 2392 |
protected $dataAccessType = 'Google_Service_Genomics_DataAccessOptions'; |
| 2393 |
protected $dataAccessDataType = ''; |
| 2394 |
|
| 2395 |
|
| 2396 |
public function setCloudAudit(Google_Service_Genomics_CloudAuditOptions $cloudAudit) |
| 2397 |
{ |
| 2398 |
$this->cloudAudit = $cloudAudit; |
| 2399 |
} |
| 2400 |
public function getCloudAudit() |
| 2401 |
{ |
| 2402 |
return $this->cloudAudit; |
| 2403 |
} |
| 2404 |
public function setCounter(Google_Service_Genomics_CounterOptions $counter) |
| 2405 |
{ |
| 2406 |
$this->counter = $counter; |
| 2407 |
} |
| 2408 |
public function getCounter() |
| 2409 |
{ |
| 2410 |
return $this->counter; |
| 2411 |
} |
| 2412 |
public function setDataAccess(Google_Service_Genomics_DataAccessOptions $dataAccess) |
| 2413 |
{ |
| 2414 |
$this->dataAccess = $dataAccess; |
| 2415 |
} |
| 2416 |
public function getDataAccess() |
| 2417 |
{ |
| 2418 |
return $this->dataAccess; |
| 2419 |
} |
| 2420 |
} |
| 2421 |
|
| 2422 |
class Google_Service_Genomics_Operation extends Google_Model |
| 2423 |
{ |
| 2424 |
protected $internal_gapi_mappings = array( |
| 2425 |
); |
| 2426 |
public $done; |
| 2427 |
protected $errorType = 'Google_Service_Genomics_Status'; |
| 2428 |
protected $errorDataType = ''; |
| 2429 |
public $metadata; |
| 2430 |
public $name; |
| 2431 |
public $response; |
| 2432 |
|
| 2433 |
|
| 2434 |
public function setDone($done) |
| 2435 |
{ |
| 2436 |
$this->done = $done; |
| 2437 |
} |
| 2438 |
public function getDone() |
| 2439 |
{ |
| 2440 |
return $this->done; |
| 2441 |
} |
| 2442 |
public function setError(Google_Service_Genomics_Status $error) |
| 2443 |
{ |
| 2444 |
$this->error = $error; |
| 2445 |
} |
| 2446 |
public function getError() |
| 2447 |
{ |
| 2448 |
return $this->error; |
| 2449 |
} |
| 2450 |
public function setMetadata($metadata) |
| 2451 |
{ |
| 2452 |
$this->metadata = $metadata; |
| 2453 |
} |
| 2454 |
public function getMetadata() |
| 2455 |
{ |
| 2456 |
return $this->metadata; |
| 2457 |
} |
| 2458 |
public function setName($name) |
| 2459 |
{ |
| 2460 |
$this->name = $name; |
| 2461 |
} |
| 2462 |
public function getName() |
| 2463 |
{ |
| 2464 |
return $this->name; |
| 2465 |
} |
| 2466 |
public function setResponse($response) |
| 2467 |
{ |
| 2468 |
$this->response = $response; |
| 2469 |
} |
| 2470 |
public function getResponse() |
| 2471 |
{ |
| 2472 |
return $this->response; |
| 2473 |
} |
| 2474 |
} |
| 2475 |
|
| 2476 |
class Google_Service_Genomics_OperationEvent extends Google_Model |
| 2477 |
{ |
| 2478 |
protected $internal_gapi_mappings = array( |
| 2479 |
); |
| 2480 |
public $description; |
| 2481 |
|
| 2482 |
|
| 2483 |
public function setDescription($description) |
| 2484 |
{ |
| 2485 |
$this->description = $description; |
| 2486 |
} |
| 2487 |
public function getDescription() |
| 2488 |
{ |
| 2489 |
return $this->description; |
| 2490 |
} |
| 2491 |
} |
| 2492 |
|
| 2493 |
class Google_Service_Genomics_OperationMetadata extends Google_Collection |
| 2494 |
{ |
| 2495 |
protected $collection_key = 'events'; |
| 2496 |
protected $internal_gapi_mappings = array( |
| 2497 |
); |
| 2498 |
public $createTime; |
| 2499 |
protected $eventsType = 'Google_Service_Genomics_OperationEvent'; |
| 2500 |
protected $eventsDataType = 'array'; |
| 2501 |
public $projectId; |
| 2502 |
public $request; |
| 2503 |
|
| 2504 |
|
| 2505 |
public function setCreateTime($createTime) |
| 2506 |
{ |
| 2507 |
$this->createTime = $createTime; |
| 2508 |
} |
| 2509 |
public function getCreateTime() |
| 2510 |
{ |
| 2511 |
return $this->createTime; |
| 2512 |
} |
| 2513 |
public function setEvents($events) |
| 2514 |
{ |
| 2515 |
$this->events = $events; |
| 2516 |
} |
| 2517 |
public function getEvents() |
| 2518 |
{ |
| 2519 |
return $this->events; |
| 2520 |
} |
| 2521 |
public function setProjectId($projectId) |
| 2522 |
{ |
| 2523 |
$this->projectId = $projectId; |
| 2524 |
} |
| 2525 |
public function getProjectId() |
| 2526 |
{ |
| 2527 |
return $this->projectId; |
| 2528 |
} |
| 2529 |
public function setRequest($request) |
| 2530 |
{ |
| 2531 |
$this->request = $request; |
| 2532 |
} |
| 2533 |
public function getRequest() |
| 2534 |
{ |
| 2535 |
return $this->request; |
| 2536 |
} |
| 2537 |
} |
| 2538 |
|
| 2539 |
class Google_Service_Genomics_Policy extends Google_Collection |
| 2540 |
{ |
| 2541 |
protected $collection_key = 'rules'; |
| 2542 |
protected $internal_gapi_mappings = array( |
| 2543 |
); |
| 2544 |
protected $bindingsType = 'Google_Service_Genomics_Binding'; |
| 2545 |
protected $bindingsDataType = 'array'; |
| 2546 |
public $etag; |
| 2547 |
protected $rulesType = 'Google_Service_Genomics_Rule'; |
| 2548 |
protected $rulesDataType = 'array'; |
| 2549 |
public $version; |
| 2550 |
|
| 2551 |
|
| 2552 |
public function setBindings($bindings) |
| 2553 |
{ |
| 2554 |
$this->bindings = $bindings; |
| 2555 |
} |
| 2556 |
public function getBindings() |
| 2557 |
{ |
| 2558 |
return $this->bindings; |
| 2559 |
} |
| 2560 |
public function setEtag($etag) |
| 2561 |
{ |
| 2562 |
$this->etag = $etag; |
| 2563 |
} |
| 2564 |
public function getEtag() |
| 2565 |
{ |
| 2566 |
return $this->etag; |
| 2567 |
} |
| 2568 |
public function setRules($rules) |
| 2569 |
{ |
| 2570 |
$this->rules = $rules; |
| 2571 |
} |
| 2572 |
public function getRules() |
| 2573 |
{ |
| 2574 |
return $this->rules; |
| 2575 |
} |
| 2576 |
public function setVersion($version) |
| 2577 |
{ |
| 2578 |
$this->version = $version; |
| 2579 |
} |
| 2580 |
public function getVersion() |
| 2581 |
{ |
| 2582 |
return $this->version; |
| 2583 |
} |
| 2584 |
} |
| 2585 |
|
| 2586 |
class Google_Service_Genomics_Position extends Google_Model |
| 2587 |
{ |
| 2588 |
protected $internal_gapi_mappings = array( |
| 2589 |
); |
| 2590 |
public $position; |
| 2591 |
public $referenceName; |
| 2592 |
public $reverseStrand; |
| 2593 |
|
| 2594 |
|
| 2595 |
public function setPosition($position) |
| 2596 |
{ |
| 2597 |
$this->position = $position; |
| 2598 |
} |
| 2599 |
public function getPosition() |
| 2600 |
{ |
| 2601 |
return $this->position; |
| 2602 |
} |
| 2603 |
public function setReferenceName($referenceName) |
| 2604 |
{ |
| 2605 |
$this->referenceName = $referenceName; |
| 2606 |
} |
| 2607 |
public function getReferenceName() |
| 2608 |
{ |
| 2609 |
return $this->referenceName; |
| 2610 |
} |
| 2611 |
public function setReverseStrand($reverseStrand) |
| 2612 |
{ |
| 2613 |
$this->reverseStrand = $reverseStrand; |
| 2614 |
} |
| 2615 |
public function getReverseStrand() |
| 2616 |
{ |
| 2617 |
return $this->reverseStrand; |
| 2618 |
} |
| 2619 |
} |
| 2620 |
|
| 2621 |
class Google_Service_Genomics_Program extends Google_Model |
| 2622 |
{ |
| 2623 |
protected $internal_gapi_mappings = array( |
| 2624 |
); |
| 2625 |
public $commandLine; |
| 2626 |
public $id; |
| 2627 |
public $name; |
| 2628 |
public $prevProgramId; |
| 2629 |
public $version; |
| 2630 |
|
| 2631 |
|
| 2632 |
public function setCommandLine($commandLine) |
| 2633 |
{ |
| 2634 |
$this->commandLine = $commandLine; |
| 2635 |
} |
| 2636 |
public function getCommandLine() |
| 2637 |
{ |
| 2638 |
return $this->commandLine; |
| 2639 |
} |
| 2640 |
public function setId($id) |
| 2641 |
{ |
| 2642 |
$this->id = $id; |
| 2643 |
} |
| 2644 |
public function getId() |
| 2645 |
{ |
| 2646 |
return $this->id; |
| 2647 |
} |
| 2648 |
public function setName($name) |
| 2649 |
{ |
| 2650 |
$this->name = $name; |
| 2651 |
} |
| 2652 |
public function getName() |
| 2653 |
{ |
| 2654 |
return $this->name; |
| 2655 |
} |
| 2656 |
public function setPrevProgramId($prevProgramId) |
| 2657 |
{ |
| 2658 |
$this->prevProgramId = $prevProgramId; |
| 2659 |
} |
| 2660 |
public function getPrevProgramId() |
| 2661 |
{ |
| 2662 |
return $this->prevProgramId; |
| 2663 |
} |
| 2664 |
public function setVersion($version) |
| 2665 |
{ |
| 2666 |
$this->version = $version; |
| 2667 |
} |
| 2668 |
public function getVersion() |
| 2669 |
{ |
| 2670 |
return $this->version; |
| 2671 |
} |
| 2672 |
} |
| 2673 |
|
| 2674 |
class Google_Service_Genomics_Range extends Google_Model |
| 2675 |
{ |
| 2676 |
protected $internal_gapi_mappings = array( |
| 2677 |
); |
| 2678 |
public $end; |
| 2679 |
public $referenceName; |
| 2680 |
public $start; |
| 2681 |
|
| 2682 |
|
| 2683 |
public function setEnd($end) |
| 2684 |
{ |
| 2685 |
$this->end = $end; |
| 2686 |
} |
| 2687 |
public function getEnd() |
| 2688 |
{ |
| 2689 |
return $this->end; |
| 2690 |
} |
| 2691 |
public function setReferenceName($referenceName) |
| 2692 |
{ |
| 2693 |
$this->referenceName = $referenceName; |
| 2694 |
} |
| 2695 |
public function getReferenceName() |
| 2696 |
{ |
| 2697 |
return $this->referenceName; |
| 2698 |
} |
| 2699 |
public function setStart($start) |
| 2700 |
{ |
| 2701 |
$this->start = $start; |
| 2702 |
} |
| 2703 |
public function getStart() |
| 2704 |
{ |
| 2705 |
return $this->start; |
| 2706 |
} |
| 2707 |
} |
| 2708 |
|
| 2709 |
class Google_Service_Genomics_Read extends Google_Collection |
| 2710 |
{ |
| 2711 |
protected $collection_key = 'alignedQuality'; |
| 2712 |
protected $internal_gapi_mappings = array( |
| 2713 |
); |
| 2714 |
public $alignedQuality; |
| 2715 |
public $alignedSequence; |
| 2716 |
protected $alignmentType = 'Google_Service_Genomics_LinearAlignment'; |
| 2717 |
protected $alignmentDataType = ''; |
| 2718 |
public $duplicateFragment; |
| 2719 |
public $failedVendorQualityChecks; |
| 2720 |
public $fragmentLength; |
| 2721 |
public $fragmentName; |
| 2722 |
public $id; |
| 2723 |
public $info; |
| 2724 |
protected $nextMatePositionType = 'Google_Service_Genomics_Position'; |
| 2725 |
protected $nextMatePositionDataType = ''; |
| 2726 |
public $numberReads; |
| 2727 |
public $properPlacement; |
| 2728 |
public $readGroupId; |
| 2729 |
public $readGroupSetId; |
| 2730 |
public $readNumber; |
| 2731 |
public $secondaryAlignment; |
| 2732 |
public $supplementaryAlignment; |
| 2733 |
|
| 2734 |
|
| 2735 |
public function setAlignedQuality($alignedQuality) |
| 2736 |
{ |
| 2737 |
$this->alignedQuality = $alignedQuality; |
| 2738 |
} |
| 2739 |
public function getAlignedQuality() |
| 2740 |
{ |
| 2741 |
return $this->alignedQuality; |
| 2742 |
} |
| 2743 |
public function setAlignedSequence($alignedSequence) |
| 2744 |
{ |
| 2745 |
$this->alignedSequence = $alignedSequence; |
| 2746 |
} |
| 2747 |
public function getAlignedSequence() |
| 2748 |
{ |
| 2749 |
return $this->alignedSequence; |
| 2750 |
} |
| 2751 |
public function setAlignment(Google_Service_Genomics_LinearAlignment $alignment) |
| 2752 |
{ |
| 2753 |
$this->alignment = $alignment; |
| 2754 |
} |
| 2755 |
public function getAlignment() |
| 2756 |
{ |
| 2757 |
return $this->alignment; |
| 2758 |
} |
| 2759 |
public function setDuplicateFragment($duplicateFragment) |
| 2760 |
{ |
| 2761 |
$this->duplicateFragment = $duplicateFragment; |
| 2762 |
} |
| 2763 |
public function getDuplicateFragment() |
| 2764 |
{ |
| 2765 |
return $this->duplicateFragment; |
| 2766 |
} |
| 2767 |
public function setFailedVendorQualityChecks($failedVendorQualityChecks) |
| 2768 |
{ |
| 2769 |
$this->failedVendorQualityChecks = $failedVendorQualityChecks; |
| 2770 |
} |
| 2771 |
public function getFailedVendorQualityChecks() |
| 2772 |
{ |
| 2773 |
return $this->failedVendorQualityChecks; |
| 2774 |
} |
| 2775 |
public function setFragmentLength($fragmentLength) |
| 2776 |
{ |
| 2777 |
$this->fragmentLength = $fragmentLength; |
| 2778 |
} |
| 2779 |
public function getFragmentLength() |
| 2780 |
{ |
| 2781 |
return $this->fragmentLength; |
| 2782 |
} |
| 2783 |
public function setFragmentName($fragmentName) |
| 2784 |
{ |
| 2785 |
$this->fragmentName = $fragmentName; |
| 2786 |
} |
| 2787 |
public function getFragmentName() |
| 2788 |
{ |
| 2789 |
return $this->fragmentName; |
| 2790 |
} |
| 2791 |
public function setId($id) |
| 2792 |
{ |
| 2793 |
$this->id = $id; |
| 2794 |
} |
| 2795 |
public function getId() |
| 2796 |
{ |
| 2797 |
return $this->id; |
| 2798 |
} |
| 2799 |
public function setInfo($info) |
| 2800 |
{ |
| 2801 |
$this->info = $info; |
| 2802 |
} |
| 2803 |
public function getInfo() |
| 2804 |
{ |
| 2805 |
return $this->info; |
| 2806 |
} |
| 2807 |
public function setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition) |
| 2808 |
{ |
| 2809 |
$this->nextMatePosition = $nextMatePosition; |
| 2810 |
} |
| 2811 |
public function getNextMatePosition() |
| 2812 |
{ |
| 2813 |
return $this->nextMatePosition; |
| 2814 |
} |
| 2815 |
public function setNumberReads($numberReads) |
| 2816 |
{ |
| 2817 |
$this->numberReads = $numberReads; |
| 2818 |
} |
| 2819 |
public function getNumberReads() |
| 2820 |
{ |
| 2821 |
return $this->numberReads; |
| 2822 |
} |
| 2823 |
public function setProperPlacement($properPlacement) |
| 2824 |
{ |
| 2825 |
$this->properPlacement = $properPlacement; |
| 2826 |
} |
| 2827 |
public function getProperPlacement() |
| 2828 |
{ |
| 2829 |
return $this->properPlacement; |
| 2830 |
} |
| 2831 |
public function setReadGroupId($readGroupId) |
| 2832 |
{ |
| 2833 |
$this->readGroupId = $readGroupId; |
| 2834 |
} |
| 2835 |
public function getReadGroupId() |
| 2836 |
{ |
| 2837 |
return $this->readGroupId; |
| 2838 |
} |
| 2839 |
public function setReadGroupSetId($readGroupSetId) |
| 2840 |
{ |
| 2841 |
$this->readGroupSetId = $readGroupSetId; |
| 2842 |
} |
| 2843 |
public function getReadGroupSetId() |
| 2844 |
{ |
| 2845 |
return $this->readGroupSetId; |
| 2846 |
} |
| 2847 |
public function setReadNumber($readNumber) |
| 2848 |
{ |
| 2849 |
$this->readNumber = $readNumber; |
| 2850 |
} |
| 2851 |
public function getReadNumber() |
| 2852 |
{ |
| 2853 |
return $this->readNumber; |
| 2854 |
} |
| 2855 |
public function setSecondaryAlignment($secondaryAlignment) |
| 2856 |
{ |
| 2857 |
$this->secondaryAlignment = $secondaryAlignment; |
| 2858 |
} |
| 2859 |
public function getSecondaryAlignment() |
| 2860 |
{ |
| 2861 |
return $this->secondaryAlignment; |
| 2862 |
} |
| 2863 |
public function setSupplementaryAlignment($supplementaryAlignment) |
| 2864 |
{ |
| 2865 |
$this->supplementaryAlignment = $supplementaryAlignment; |
| 2866 |
} |
| 2867 |
public function getSupplementaryAlignment() |
| 2868 |
{ |
| 2869 |
return $this->supplementaryAlignment; |
| 2870 |
} |
| 2871 |
} |
| 2872 |
|
| 2873 |
class Google_Service_Genomics_ReadGroup extends Google_Collection |
| 2874 |
{ |
| 2875 |
protected $collection_key = 'programs'; |
| 2876 |
protected $internal_gapi_mappings = array( |
| 2877 |
); |
| 2878 |
public $datasetId; |
| 2879 |
public $description; |
| 2880 |
protected $experimentType = 'Google_Service_Genomics_Experiment'; |
| 2881 |
protected $experimentDataType = ''; |
| 2882 |
public $id; |
| 2883 |
public $info; |
| 2884 |
public $name; |
| 2885 |
public $predictedInsertSize; |
| 2886 |
protected $programsType = 'Google_Service_Genomics_Program'; |
| 2887 |
protected $programsDataType = 'array'; |
| 2888 |
public $referenceSetId; |
| 2889 |
public $sampleId; |
| 2890 |
|
| 2891 |
|
| 2892 |
public function setDatasetId($datasetId) |
| 2893 |
{ |
| 2894 |
$this->datasetId = $datasetId; |
| 2895 |
} |
| 2896 |
public function getDatasetId() |
| 2897 |
{ |
| 2898 |
return $this->datasetId; |
| 2899 |
} |
| 2900 |
public function setDescription($description) |
| 2901 |
{ |
| 2902 |
$this->description = $description; |
| 2903 |
} |
| 2904 |
public function getDescription() |
| 2905 |
{ |
| 2906 |
return $this->description; |
| 2907 |
} |
| 2908 |
public function setExperiment(Google_Service_Genomics_Experiment $experiment) |
| 2909 |
{ |
| 2910 |
$this->experiment = $experiment; |
| 2911 |
} |
| 2912 |
public function getExperiment() |
| 2913 |
{ |
| 2914 |
return $this->experiment; |
| 2915 |
} |
| 2916 |
public function setId($id) |
| 2917 |
{ |
| 2918 |
$this->id = $id; |
| 2919 |
} |
| 2920 |
public function getId() |
| 2921 |
{ |
| 2922 |
return $this->id; |
| 2923 |
} |
| 2924 |
public function setInfo($info) |
| 2925 |
{ |
| 2926 |
$this->info = $info; |
| 2927 |
} |
| 2928 |
public function getInfo() |
| 2929 |
{ |
| 2930 |
return $this->info; |
| 2931 |
} |
| 2932 |
public function setName($name) |
| 2933 |
{ |
| 2934 |
$this->name = $name; |
| 2935 |
} |
| 2936 |
public function getName() |
| 2937 |
{ |
| 2938 |
return $this->name; |
| 2939 |
} |
| 2940 |
public function setPredictedInsertSize($predictedInsertSize) |
| 2941 |
{ |
| 2942 |
$this->predictedInsertSize = $predictedInsertSize; |
| 2943 |
} |
| 2944 |
public function getPredictedInsertSize() |
| 2945 |
{ |
| 2946 |
return $this->predictedInsertSize; |
| 2947 |
} |
| 2948 |
public function setPrograms($programs) |
| 2949 |
{ |
| 2950 |
$this->programs = $programs; |
| 2951 |
} |
| 2952 |
public function getPrograms() |
| 2953 |
{ |
| 2954 |
return $this->programs; |
| 2955 |
} |
| 2956 |
public function setReferenceSetId($referenceSetId) |
| 2957 |
{ |
| 2958 |
$this->referenceSetId = $referenceSetId; |
| 2959 |
} |
| 2960 |
public function getReferenceSetId() |
| 2961 |
{ |
| 2962 |
return $this->referenceSetId; |
| 2963 |
} |
| 2964 |
public function setSampleId($sampleId) |
| 2965 |
{ |
| 2966 |
$this->sampleId = $sampleId; |
| 2967 |
} |
| 2968 |
public function getSampleId() |
| 2969 |
{ |
| 2970 |
return $this->sampleId; |
| 2971 |
} |
| 2972 |
} |
| 2973 |
|
| 2974 |
class Google_Service_Genomics_ReadGroupSet extends Google_Collection |
| 2975 |
{ |
| 2976 |
protected $collection_key = 'readGroups'; |
| 2977 |
protected $internal_gapi_mappings = array( |
| 2978 |
); |
| 2979 |
public $datasetId; |
| 2980 |
public $filename; |
| 2981 |
public $id; |
| 2982 |
public $info; |
| 2983 |
public $name; |
| 2984 |
protected $readGroupsType = 'Google_Service_Genomics_ReadGroup'; |
| 2985 |
protected $readGroupsDataType = 'array'; |
| 2986 |
public $referenceSetId; |
| 2987 |
|
| 2988 |
|
| 2989 |
public function setDatasetId($datasetId) |
| 2990 |
{ |
| 2991 |
$this->datasetId = $datasetId; |
| 2992 |
} |
| 2993 |
public function getDatasetId() |
| 2994 |
{ |
| 2995 |
return $this->datasetId; |
| 2996 |
} |
| 2997 |
public function setFilename($filename) |
| 2998 |
{ |
| 2999 |
$this->filename = $filename; |
| 3000 |
} |
| 3001 |
public function getFilename() |
| 3002 |
{ |
| 3003 |
return $this->filename; |
| 3004 |
} |
| 3005 |
public function setId($id) |
| 3006 |
{ |
| 3007 |
$this->id = $id; |
| 3008 |
} |
| 3009 |
public function getId() |
| 3010 |
{ |
| 3011 |
return $this->id; |
| 3012 |
} |
| 3013 |
public function setInfo($info) |
| 3014 |
{ |
| 3015 |
$this->info = $info; |
| 3016 |
} |
| 3017 |
public function getInfo() |
| 3018 |
{ |
| 3019 |
return $this->info; |
| 3020 |
} |
| 3021 |
public function setName($name) |
| 3022 |
{ |
| 3023 |
$this->name = $name; |
| 3024 |
} |
| 3025 |
public function getName() |
| 3026 |
{ |
| 3027 |
return $this->name; |
| 3028 |
} |
| 3029 |
public function setReadGroups($readGroups) |
| 3030 |
{ |
| 3031 |
$this->readGroups = $readGroups; |
| 3032 |
} |
| 3033 |
public function getReadGroups() |
| 3034 |
{ |
| 3035 |
return $this->readGroups; |
| 3036 |
} |
| 3037 |
public function setReferenceSetId($referenceSetId) |
| 3038 |
{ |
| 3039 |
$this->referenceSetId = $referenceSetId; |
| 3040 |
} |
| 3041 |
public function getReferenceSetId() |
| 3042 |
{ |
| 3043 |
return $this->referenceSetId; |
| 3044 |
} |
| 3045 |
} |
| 3046 |
|
| 3047 |
class Google_Service_Genomics_Reference extends Google_Collection |
| 3048 |
{ |
| 3049 |
protected $collection_key = 'sourceAccessions'; |
| 3050 |
protected $internal_gapi_mappings = array( |
| 3051 |
); |
| 3052 |
public $id; |
| 3053 |
public $length; |
| 3054 |
public $md5checksum; |
| 3055 |
public $name; |
| 3056 |
public $ncbiTaxonId; |
| 3057 |
public $sourceAccessions; |
| 3058 |
public $sourceUri; |
| 3059 |
|
| 3060 |
|
| 3061 |
public function setId($id) |
| 3062 |
{ |
| 3063 |
$this->id = $id; |
| 3064 |
} |
| 3065 |
public function getId() |
| 3066 |
{ |
| 3067 |
return $this->id; |
| 3068 |
} |
| 3069 |
public function setLength($length) |
| 3070 |
{ |
| 3071 |
$this->length = $length; |
| 3072 |
} |
| 3073 |
public function getLength() |
| 3074 |
{ |
| 3075 |
return $this->length; |
| 3076 |
} |
| 3077 |
public function setMd5checksum($md5checksum) |
| 3078 |
{ |
| 3079 |
$this->md5checksum = $md5checksum; |
| 3080 |
} |
| 3081 |
public function getMd5checksum() |
| 3082 |
{ |
| 3083 |
return $this->md5checksum; |
| 3084 |
} |
| 3085 |
public function setName($name) |
| 3086 |
{ |
| 3087 |
$this->name = $name; |
| 3088 |
} |
| 3089 |
public function getName() |
| 3090 |
{ |
| 3091 |
return $this->name; |
| 3092 |
} |
| 3093 |
public function setNcbiTaxonId($ncbiTaxonId) |
| 3094 |
{ |
| 3095 |
$this->ncbiTaxonId = $ncbiTaxonId; |
| 3096 |
} |
| 3097 |
public function getNcbiTaxonId() |
| 3098 |
{ |
| 3099 |
return $this->ncbiTaxonId; |
| 3100 |
} |
| 3101 |
public function setSourceAccessions($sourceAccessions) |
| 3102 |
{ |
| 3103 |
$this->sourceAccessions = $sourceAccessions; |
| 3104 |
} |
| 3105 |
public function getSourceAccessions() |
| 3106 |
{ |
| 3107 |
return $this->sourceAccessions; |
| 3108 |
} |
| 3109 |
public function setSourceUri($sourceUri) |
| 3110 |
{ |
| 3111 |
$this->sourceUri = $sourceUri; |
| 3112 |
} |
| 3113 |
public function getSourceUri() |
| 3114 |
{ |
| 3115 |
return $this->sourceUri; |
| 3116 |
} |
| 3117 |
} |
| 3118 |
|
| 3119 |
class Google_Service_Genomics_ReferenceBound extends Google_Model |
| 3120 |
{ |
| 3121 |
protected $internal_gapi_mappings = array( |
| 3122 |
); |
| 3123 |
public $referenceName; |
| 3124 |
public $upperBound; |
| 3125 |
|
| 3126 |
|
| 3127 |
public function setReferenceName($referenceName) |
| 3128 |
{ |
| 3129 |
$this->referenceName = $referenceName; |
| 3130 |
} |
| 3131 |
public function getReferenceName() |
| 3132 |
{ |
| 3133 |
return $this->referenceName; |
| 3134 |
} |
| 3135 |
public function setUpperBound($upperBound) |
| 3136 |
{ |
| 3137 |
$this->upperBound = $upperBound; |
| 3138 |
} |
| 3139 |
public function getUpperBound() |
| 3140 |
{ |
| 3141 |
return $this->upperBound; |
| 3142 |
} |
| 3143 |
} |
| 3144 |
|
| 3145 |
class Google_Service_Genomics_ReferenceSet extends Google_Collection |
| 3146 |
{ |
| 3147 |
protected $collection_key = 'sourceAccessions'; |
| 3148 |
protected $internal_gapi_mappings = array( |
| 3149 |
); |
| 3150 |
public $assemblyId; |
| 3151 |
public $description; |
| 3152 |
public $id; |
| 3153 |
public $md5checksum; |
| 3154 |
public $ncbiTaxonId; |
| 3155 |
public $referenceIds; |
| 3156 |
public $sourceAccessions; |
| 3157 |
public $sourceUri; |
| 3158 |
|
| 3159 |
|
| 3160 |
public function setAssemblyId($assemblyId) |
| 3161 |
{ |
| 3162 |
$this->assemblyId = $assemblyId; |
| 3163 |
} |
| 3164 |
public function getAssemblyId() |
| 3165 |
{ |
| 3166 |
return $this->assemblyId; |
| 3167 |
} |
| 3168 |
public function setDescription($description) |
| 3169 |
{ |
| 3170 |
$this->description = $description; |
| 3171 |
} |
| 3172 |
public function getDescription() |
| 3173 |
{ |
| 3174 |
return $this->description; |
| 3175 |
} |
| 3176 |
public function setId($id) |
| 3177 |
{ |
| 3178 |
$this->id = $id; |
| 3179 |
} |
| 3180 |
public function getId() |
| 3181 |
{ |
| 3182 |
return $this->id; |
| 3183 |
} |
| 3184 |
public function setMd5checksum($md5checksum) |
| 3185 |
{ |
| 3186 |
$this->md5checksum = $md5checksum; |
| 3187 |
} |
| 3188 |
public function getMd5checksum() |
| 3189 |
{ |
| 3190 |
return $this->md5checksum; |
| 3191 |
} |
| 3192 |
public function setNcbiTaxonId($ncbiTaxonId) |
| 3193 |
{ |
| 3194 |
$this->ncbiTaxonId = $ncbiTaxonId; |
| 3195 |
} |
| 3196 |
public function getNcbiTaxonId() |
| 3197 |
{ |
| 3198 |
return $this->ncbiTaxonId; |
| 3199 |
} |
| 3200 |
public function setReferenceIds($referenceIds) |
| 3201 |
{ |
| 3202 |
$this->referenceIds = $referenceIds; |
| 3203 |
} |
| 3204 |
public function getReferenceIds() |
| 3205 |
{ |
| 3206 |
return $this->referenceIds; |
| 3207 |
} |
| 3208 |
public function setSourceAccessions($sourceAccessions) |
| 3209 |
{ |
| 3210 |
$this->sourceAccessions = $sourceAccessions; |
| 3211 |
} |
| 3212 |
public function getSourceAccessions() |
| 3213 |
{ |
| 3214 |
return $this->sourceAccessions; |
| 3215 |
} |
| 3216 |
public function setSourceUri($sourceUri) |
| 3217 |
{ |
| 3218 |
$this->sourceUri = $sourceUri; |
| 3219 |
} |
| 3220 |
public function getSourceUri() |
| 3221 |
{ |
| 3222 |
return $this->sourceUri; |
| 3223 |
} |
| 3224 |
} |
| 3225 |
|
| 3226 |
class Google_Service_Genomics_Rule extends Google_Collection |
| 3227 |
{ |
| 3228 |
protected $collection_key = 'permissions'; |
| 3229 |
protected $internal_gapi_mappings = array( |
| 3230 |
); |
| 3231 |
public $action; |
| 3232 |
protected $conditionsType = 'Google_Service_Genomics_Condition'; |
| 3233 |
protected $conditionsDataType = 'array'; |
| 3234 |
public $description; |
| 3235 |
public $in; |
| 3236 |
protected $logConfigType = 'Google_Service_Genomics_LogConfig'; |
| 3237 |
protected $logConfigDataType = 'array'; |
| 3238 |
public $notIn; |
| 3239 |
public $permissions; |
| 3240 |
|
| 3241 |
|
| 3242 |
public function setAction($action) |
| 3243 |
{ |
| 3244 |
$this->action = $action; |
| 3245 |
} |
| 3246 |
public function getAction() |
| 3247 |
{ |
| 3248 |
return $this->action; |
| 3249 |
} |
| 3250 |
public function setConditions($conditions) |
| 3251 |
{ |
| 3252 |
$this->conditions = $conditions; |
| 3253 |
} |
| 3254 |
public function getConditions() |
| 3255 |
{ |
| 3256 |
return $this->conditions; |
| 3257 |
} |
| 3258 |
public function setDescription($description) |
| 3259 |
{ |
| 3260 |
$this->description = $description; |
| 3261 |
} |
| 3262 |
public function getDescription() |
| 3263 |
{ |
| 3264 |
return $this->description; |
| 3265 |
} |
| 3266 |
public function setIn($in) |
| 3267 |
{ |
| 3268 |
$this->in = $in; |
| 3269 |
} |
| 3270 |
public function getIn() |
| 3271 |
{ |
| 3272 |
return $this->in; |
| 3273 |
} |
| 3274 |
public function setLogConfig($logConfig) |
| 3275 |
{ |
| 3276 |
$this->logConfig = $logConfig; |
| 3277 |
} |
| 3278 |
public function getLogConfig() |
| 3279 |
{ |
| 3280 |
return $this->logConfig; |
| 3281 |
} |
| 3282 |
public function setNotIn($notIn) |
| 3283 |
{ |
| 3284 |
$this->notIn = $notIn; |
| 3285 |
} |
| 3286 |
public function getNotIn() |
| 3287 |
{ |
| 3288 |
return $this->notIn; |
| 3289 |
} |
| 3290 |
public function setPermissions($permissions) |
| 3291 |
{ |
| 3292 |
$this->permissions = $permissions; |
| 3293 |
} |
| 3294 |
public function getPermissions() |
| 3295 |
{ |
| 3296 |
return $this->permissions; |
| 3297 |
} |
| 3298 |
} |
| 3299 |
|
| 3300 |
class Google_Service_Genomics_SearchCallSetsRequest extends Google_Collection |
| 3301 |
{ |
| 3302 |
protected $collection_key = 'variantSetIds'; |
| 3303 |
protected $internal_gapi_mappings = array( |
| 3304 |
); |
| 3305 |
public $name; |
| 3306 |
public $pageSize; |
| 3307 |
public $pageToken; |
| 3308 |
public $variantSetIds; |
| 3309 |
|
| 3310 |
|
| 3311 |
public function setName($name) |
| 3312 |
{ |
| 3313 |
$this->name = $name; |
| 3314 |
} |
| 3315 |
public function getName() |
| 3316 |
{ |
| 3317 |
return $this->name; |
| 3318 |
} |
| 3319 |
public function setPageSize($pageSize) |
| 3320 |
{ |
| 3321 |
$this->pageSize = $pageSize; |
| 3322 |
} |
| 3323 |
public function getPageSize() |
| 3324 |
{ |
| 3325 |
return $this->pageSize; |
| 3326 |
} |
| 3327 |
public function setPageToken($pageToken) |
| 3328 |
{ |
| 3329 |
$this->pageToken = $pageToken; |
| 3330 |
} |
| 3331 |
public function getPageToken() |
| 3332 |
{ |
| 3333 |
return $this->pageToken; |
| 3334 |
} |
| 3335 |
public function setVariantSetIds($variantSetIds) |
| 3336 |
{ |
| 3337 |
$this->variantSetIds = $variantSetIds; |
| 3338 |
} |
| 3339 |
public function getVariantSetIds() |
| 3340 |
{ |
| 3341 |
return $this->variantSetIds; |
| 3342 |
} |
| 3343 |
} |
| 3344 |
|
| 3345 |
class Google_Service_Genomics_SearchCallSetsResponse extends Google_Collection |
| 3346 |
{ |
| 3347 |
protected $collection_key = 'callSets'; |
| 3348 |
protected $internal_gapi_mappings = array( |
| 3349 |
); |
| 3350 |
protected $callSetsType = 'Google_Service_Genomics_CallSet'; |
| 3351 |
protected $callSetsDataType = 'array'; |
| 3352 |
public $nextPageToken; |
| 3353 |
|
| 3354 |
|
| 3355 |
public function setCallSets($callSets) |
| 3356 |
{ |
| 3357 |
$this->callSets = $callSets; |
| 3358 |
} |
| 3359 |
public function getCallSets() |
| 3360 |
{ |
| 3361 |
return $this->callSets; |
| 3362 |
} |
| 3363 |
public function setNextPageToken($nextPageToken) |
| 3364 |
{ |
| 3365 |
$this->nextPageToken = $nextPageToken; |
| 3366 |
} |
| 3367 |
public function getNextPageToken() |
| 3368 |
{ |
| 3369 |
return $this->nextPageToken; |
| 3370 |
} |
| 3371 |
} |
| 3372 |
|
| 3373 |
class Google_Service_Genomics_SearchReadGroupSetsRequest extends Google_Collection |
| 3374 |
{ |
| 3375 |
protected $collection_key = 'datasetIds'; |
| 3376 |
protected $internal_gapi_mappings = array( |
| 3377 |
); |
| 3378 |
public $datasetIds; |
| 3379 |
public $name; |
| 3380 |
public $pageSize; |
| 3381 |
public $pageToken; |
| 3382 |
|
| 3383 |
|
| 3384 |
public function setDatasetIds($datasetIds) |
| 3385 |
{ |
| 3386 |
$this->datasetIds = $datasetIds; |
| 3387 |
} |
| 3388 |
public function getDatasetIds() |
| 3389 |
{ |
| 3390 |
return $this->datasetIds; |
| 3391 |
} |
| 3392 |
public function setName($name) |
| 3393 |
{ |
| 3394 |
$this->name = $name; |
| 3395 |
} |
| 3396 |
public function getName() |
| 3397 |
{ |
| 3398 |
return $this->name; |
| 3399 |
} |
| 3400 |
public function setPageSize($pageSize) |
| 3401 |
{ |
| 3402 |
$this->pageSize = $pageSize; |
| 3403 |
} |
| 3404 |
public function getPageSize() |
| 3405 |
{ |
| 3406 |
return $this->pageSize; |
| 3407 |
} |
| 3408 |
public function setPageToken($pageToken) |
| 3409 |
{ |
| 3410 |
$this->pageToken = $pageToken; |
| 3411 |
} |
| 3412 |
public function getPageToken() |
| 3413 |
{ |
| 3414 |
return $this->pageToken; |
| 3415 |
} |
| 3416 |
} |
| 3417 |
|
| 3418 |
class Google_Service_Genomics_SearchReadGroupSetsResponse extends Google_Collection |
| 3419 |
{ |
| 3420 |
protected $collection_key = 'readGroupSets'; |
| 3421 |
protected $internal_gapi_mappings = array( |
| 3422 |
); |
| 3423 |
public $nextPageToken; |
| 3424 |
protected $readGroupSetsType = 'Google_Service_Genomics_ReadGroupSet'; |
| 3425 |
protected $readGroupSetsDataType = 'array'; |
| 3426 |
|
| 3427 |
|
| 3428 |
public function setNextPageToken($nextPageToken) |
| 3429 |
{ |
| 3430 |
$this->nextPageToken = $nextPageToken; |
| 3431 |
} |
| 3432 |
public function getNextPageToken() |
| 3433 |
{ |
| 3434 |
return $this->nextPageToken; |
| 3435 |
} |
| 3436 |
public function setReadGroupSets($readGroupSets) |
| 3437 |
{ |
| 3438 |
$this->readGroupSets = $readGroupSets; |
| 3439 |
} |
| 3440 |
public function getReadGroupSets() |
| 3441 |
{ |
| 3442 |
return $this->readGroupSets; |
| 3443 |
} |
| 3444 |
} |
| 3445 |
|
| 3446 |
class Google_Service_Genomics_SearchReadsRequest extends Google_Collection |
| 3447 |
{ |
| 3448 |
protected $collection_key = 'readGroupSetIds'; |
| 3449 |
protected $internal_gapi_mappings = array( |
| 3450 |
); |
| 3451 |
public $end; |
| 3452 |
public $pageSize; |
| 3453 |
public $pageToken; |
| 3454 |
public $readGroupIds; |
| 3455 |
public $readGroupSetIds; |
| 3456 |
public $referenceName; |
| 3457 |
public $start; |
| 3458 |
|
| 3459 |
|
| 3460 |
public function setEnd($end) |
| 3461 |
{ |
| 3462 |
$this->end = $end; |
| 3463 |
} |
| 3464 |
public function getEnd() |
| 3465 |
{ |
| 3466 |
return $this->end; |
| 3467 |
} |
| 3468 |
public function setPageSize($pageSize) |
| 3469 |
{ |
| 3470 |
$this->pageSize = $pageSize; |
| 3471 |
} |
| 3472 |
public function getPageSize() |
| 3473 |
{ |
| 3474 |
return $this->pageSize; |
| 3475 |
} |
| 3476 |
public function setPageToken($pageToken) |
| 3477 |
{ |
| 3478 |
$this->pageToken = $pageToken; |
| 3479 |
} |
| 3480 |
public function getPageToken() |
| 3481 |
{ |
| 3482 |
return $this->pageToken; |
| 3483 |
} |
| 3484 |
public function setReadGroupIds($readGroupIds) |
| 3485 |
{ |
| 3486 |
$this->readGroupIds = $readGroupIds; |
| 3487 |
} |
| 3488 |
public function getReadGroupIds() |
| 3489 |
{ |
| 3490 |
return $this->readGroupIds; |
| 3491 |
} |
| 3492 |
public function setReadGroupSetIds($readGroupSetIds) |
| 3493 |
{ |
| 3494 |
$this->readGroupSetIds = $readGroupSetIds; |
| 3495 |
} |
| 3496 |
public function getReadGroupSetIds() |
| 3497 |
{ |
| 3498 |
return $this->readGroupSetIds; |
| 3499 |
} |
| 3500 |
public function setReferenceName($referenceName) |
| 3501 |
{ |
| 3502 |
$this->referenceName = $referenceName; |
| 3503 |
} |
| 3504 |
public function getReferenceName() |
| 3505 |
{ |
| 3506 |
return $this->referenceName; |
| 3507 |
} |
| 3508 |
public function setStart($start) |
| 3509 |
{ |
| 3510 |
$this->start = $start; |
| 3511 |
} |
| 3512 |
public function getStart() |
| 3513 |
{ |
| 3514 |
return $this->start; |
| 3515 |
} |
| 3516 |
} |
| 3517 |
|
| 3518 |
class Google_Service_Genomics_SearchReadsResponse extends Google_Collection |
| 3519 |
{ |
| 3520 |
protected $collection_key = 'alignments'; |
| 3521 |
protected $internal_gapi_mappings = array( |
| 3522 |
); |
| 3523 |
protected $alignmentsType = 'Google_Service_Genomics_Read'; |
| 3524 |
protected $alignmentsDataType = 'array'; |
| 3525 |
public $nextPageToken; |
| 3526 |
|
| 3527 |
|
| 3528 |
public function setAlignments($alignments) |
| 3529 |
{ |
| 3530 |
$this->alignments = $alignments; |
| 3531 |
} |
| 3532 |
public function getAlignments() |
| 3533 |
{ |
| 3534 |
return $this->alignments; |
| 3535 |
} |
| 3536 |
public function setNextPageToken($nextPageToken) |
| 3537 |
{ |
| 3538 |
$this->nextPageToken = $nextPageToken; |
| 3539 |
} |
| 3540 |
public function getNextPageToken() |
| 3541 |
{ |
| 3542 |
return $this->nextPageToken; |
| 3543 |
} |
| 3544 |
} |
| 3545 |
|
| 3546 |
class Google_Service_Genomics_SearchReferenceSetsRequest extends Google_Collection |
| 3547 |
{ |
| 3548 |
protected $collection_key = 'md5checksums'; |
| 3549 |
protected $internal_gapi_mappings = array( |
| 3550 |
); |
| 3551 |
public $accessions; |
| 3552 |
public $assemblyId; |
| 3553 |
public $md5checksums; |
| 3554 |
public $pageSize; |
| 3555 |
public $pageToken; |
| 3556 |
|
| 3557 |
|
| 3558 |
public function setAccessions($accessions) |
| 3559 |
{ |
| 3560 |
$this->accessions = $accessions; |
| 3561 |
} |
| 3562 |
public function getAccessions() |
| 3563 |
{ |
| 3564 |
return $this->accessions; |
| 3565 |
} |
| 3566 |
public function setAssemblyId($assemblyId) |
| 3567 |
{ |
| 3568 |
$this->assemblyId = $assemblyId; |
| 3569 |
} |
| 3570 |
public function getAssemblyId() |
| 3571 |
{ |
| 3572 |
return $this->assemblyId; |
| 3573 |
} |
| 3574 |
public function setMd5checksums($md5checksums) |
| 3575 |
{ |
| 3576 |
$this->md5checksums = $md5checksums; |
| 3577 |
} |
| 3578 |
public function getMd5checksums() |
| 3579 |
{ |
| 3580 |
return $this->md5checksums; |
| 3581 |
} |
| 3582 |
public function setPageSize($pageSize) |
| 3583 |
{ |
| 3584 |
$this->pageSize = $pageSize; |
| 3585 |
} |
| 3586 |
public function getPageSize() |
| 3587 |
{ |
| 3588 |
return $this->pageSize; |
| 3589 |
} |
| 3590 |
public function setPageToken($pageToken) |
| 3591 |
{ |
| 3592 |
$this->pageToken = $pageToken; |
| 3593 |
} |
| 3594 |
public function getPageToken() |
| 3595 |
{ |
| 3596 |
return $this->pageToken; |
| 3597 |
} |
| 3598 |
} |
| 3599 |
|
| 3600 |
class Google_Service_Genomics_SearchReferenceSetsResponse extends Google_Collection |
| 3601 |
{ |
| 3602 |
protected $collection_key = 'referenceSets'; |
| 3603 |
protected $internal_gapi_mappings = array( |
| 3604 |
); |
| 3605 |
public $nextPageToken; |
| 3606 |
protected $referenceSetsType = 'Google_Service_Genomics_ReferenceSet'; |
| 3607 |
protected $referenceSetsDataType = 'array'; |
| 3608 |
|
| 3609 |
|
| 3610 |
public function setNextPageToken($nextPageToken) |
| 3611 |
{ |
| 3612 |
$this->nextPageToken = $nextPageToken; |
| 3613 |
} |
| 3614 |
public function getNextPageToken() |
| 3615 |
{ |
| 3616 |
return $this->nextPageToken; |
| 3617 |
} |
| 3618 |
public function setReferenceSets($referenceSets) |
| 3619 |
{ |
| 3620 |
$this->referenceSets = $referenceSets; |
| 3621 |
} |
| 3622 |
public function getReferenceSets() |
| 3623 |
{ |
| 3624 |
return $this->referenceSets; |
| 3625 |
} |
| 3626 |
} |
| 3627 |
|
| 3628 |
class Google_Service_Genomics_SearchReferencesRequest extends Google_Collection |
| 3629 |
{ |
| 3630 |
protected $collection_key = 'md5checksums'; |
| 3631 |
protected $internal_gapi_mappings = array( |
| 3632 |
); |
| 3633 |
public $accessions; |
| 3634 |
public $md5checksums; |
| 3635 |
public $pageSize; |
| 3636 |
public $pageToken; |
| 3637 |
public $referenceSetId; |
| 3638 |
|
| 3639 |
|
| 3640 |
public function setAccessions($accessions) |
| 3641 |
{ |
| 3642 |
$this->accessions = $accessions; |
| 3643 |
} |
| 3644 |
public function getAccessions() |
| 3645 |
{ |
| 3646 |
return $this->accessions; |
| 3647 |
} |
| 3648 |
public function setMd5checksums($md5checksums) |
| 3649 |
{ |
| 3650 |
$this->md5checksums = $md5checksums; |
| 3651 |
} |
| 3652 |
public function getMd5checksums() |
| 3653 |
{ |
| 3654 |
return $this->md5checksums; |
| 3655 |
} |
| 3656 |
public function setPageSize($pageSize) |
| 3657 |
{ |
| 3658 |
$this->pageSize = $pageSize; |
| 3659 |
} |
| 3660 |
public function getPageSize() |
| 3661 |
{ |
| 3662 |
return $this->pageSize; |
| 3663 |
} |
| 3664 |
public function setPageToken($pageToken) |
| 3665 |
{ |
| 3666 |
$this->pageToken = $pageToken; |
| 3667 |
} |
| 3668 |
public function getPageToken() |
| 3669 |
{ |
| 3670 |
return $this->pageToken; |
| 3671 |
} |
| 3672 |
public function setReferenceSetId($referenceSetId) |
| 3673 |
{ |
| 3674 |
$this->referenceSetId = $referenceSetId; |
| 3675 |
} |
| 3676 |
public function getReferenceSetId() |
| 3677 |
{ |
| 3678 |
return $this->referenceSetId; |
| 3679 |
} |
| 3680 |
} |
| 3681 |
|
| 3682 |
class Google_Service_Genomics_SearchReferencesResponse extends Google_Collection |
| 3683 |
{ |
| 3684 |
protected $collection_key = 'references'; |
| 3685 |
protected $internal_gapi_mappings = array( |
| 3686 |
); |
| 3687 |
public $nextPageToken; |
| 3688 |
protected $referencesType = 'Google_Service_Genomics_Reference'; |
| 3689 |
protected $referencesDataType = 'array'; |
| 3690 |
|
| 3691 |
|
| 3692 |
public function setNextPageToken($nextPageToken) |
| 3693 |
{ |
| 3694 |
$this->nextPageToken = $nextPageToken; |
| 3695 |
} |
| 3696 |
public function getNextPageToken() |
| 3697 |
{ |
| 3698 |
return $this->nextPageToken; |
| 3699 |
} |
| 3700 |
public function setReferences($references) |
| 3701 |
{ |
| 3702 |
$this->references = $references; |
| 3703 |
} |
| 3704 |
public function getReferences() |
| 3705 |
{ |
| 3706 |
return $this->references; |
| 3707 |
} |
| 3708 |
} |
| 3709 |
|
| 3710 |
class Google_Service_Genomics_SearchVariantSetsRequest extends Google_Collection |
| 3711 |
{ |
| 3712 |
protected $collection_key = 'datasetIds'; |
| 3713 |
protected $internal_gapi_mappings = array( |
| 3714 |
); |
| 3715 |
public $datasetIds; |
| 3716 |
public $pageSize; |
| 3717 |
public $pageToken; |
| 3718 |
|
| 3719 |
|
| 3720 |
public function setDatasetIds($datasetIds) |
| 3721 |
{ |
| 3722 |
$this->datasetIds = $datasetIds; |
| 3723 |
} |
| 3724 |
public function getDatasetIds() |
| 3725 |
{ |
| 3726 |
return $this->datasetIds; |
| 3727 |
} |
| 3728 |
public function setPageSize($pageSize) |
| 3729 |
{ |
| 3730 |
$this->pageSize = $pageSize; |
| 3731 |
} |
| 3732 |
public function getPageSize() |
| 3733 |
{ |
| 3734 |
return $this->pageSize; |
| 3735 |
} |
| 3736 |
public function setPageToken($pageToken) |
| 3737 |
{ |
| 3738 |
$this->pageToken = $pageToken; |
| 3739 |
} |
| 3740 |
public function getPageToken() |
| 3741 |
{ |
| 3742 |
return $this->pageToken; |
| 3743 |
} |
| 3744 |
} |
| 3745 |
|
| 3746 |
class Google_Service_Genomics_SearchVariantSetsResponse extends Google_Collection |
| 3747 |
{ |
| 3748 |
protected $collection_key = 'variantSets'; |
| 3749 |
protected $internal_gapi_mappings = array( |
| 3750 |
); |
| 3751 |
public $nextPageToken; |
| 3752 |
protected $variantSetsType = 'Google_Service_Genomics_VariantSet'; |
| 3753 |
protected $variantSetsDataType = 'array'; |
| 3754 |
|
| 3755 |
|
| 3756 |
public function setNextPageToken($nextPageToken) |
| 3757 |
{ |
| 3758 |
$this->nextPageToken = $nextPageToken; |
| 3759 |
} |
| 3760 |
public function getNextPageToken() |
| 3761 |
{ |
| 3762 |
return $this->nextPageToken; |
| 3763 |
} |
| 3764 |
public function setVariantSets($variantSets) |
| 3765 |
{ |
| 3766 |
$this->variantSets = $variantSets; |
| 3767 |
} |
| 3768 |
public function getVariantSets() |
| 3769 |
{ |
| 3770 |
return $this->variantSets; |
| 3771 |
} |
| 3772 |
} |
| 3773 |
|
| 3774 |
class Google_Service_Genomics_SearchVariantsRequest extends Google_Collection |
| 3775 |
{ |
| 3776 |
protected $collection_key = 'variantSetIds'; |
| 3777 |
protected $internal_gapi_mappings = array( |
| 3778 |
); |
| 3779 |
public $callSetIds; |
| 3780 |
public $end; |
| 3781 |
public $maxCalls; |
| 3782 |
public $pageSize; |
| 3783 |
public $pageToken; |
| 3784 |
public $referenceName; |
| 3785 |
public $start; |
| 3786 |
public $variantName; |
| 3787 |
public $variantSetIds; |
| 3788 |
|
| 3789 |
|
| 3790 |
public function setCallSetIds($callSetIds) |
| 3791 |
{ |
| 3792 |
$this->callSetIds = $callSetIds; |
| 3793 |
} |
| 3794 |
public function getCallSetIds() |
| 3795 |
{ |
| 3796 |
return $this->callSetIds; |
| 3797 |
} |
| 3798 |
public function setEnd($end) |
| 3799 |
{ |
| 3800 |
$this->end = $end; |
| 3801 |
} |
| 3802 |
public function getEnd() |
| 3803 |
{ |
| 3804 |
return $this->end; |
| 3805 |
} |
| 3806 |
public function setMaxCalls($maxCalls) |
| 3807 |
{ |
| 3808 |
$this->maxCalls = $maxCalls; |
| 3809 |
} |
| 3810 |
public function getMaxCalls() |
| 3811 |
{ |
| 3812 |
return $this->maxCalls; |
| 3813 |
} |
| 3814 |
public function setPageSize($pageSize) |
| 3815 |
{ |
| 3816 |
$this->pageSize = $pageSize; |
| 3817 |
} |
| 3818 |
public function getPageSize() |
| 3819 |
{ |
| 3820 |
return $this->pageSize; |
| 3821 |
} |
| 3822 |
public function setPageToken($pageToken) |
| 3823 |
{ |
| 3824 |
$this->pageToken = $pageToken; |
| 3825 |
} |
| 3826 |
public function getPageToken() |
| 3827 |
{ |
| 3828 |
return $this->pageToken; |
| 3829 |
} |
| 3830 |
public function setReferenceName($referenceName) |
| 3831 |
{ |
| 3832 |
$this->referenceName = $referenceName; |
| 3833 |
} |
| 3834 |
public function getReferenceName() |
| 3835 |
{ |
| 3836 |
return $this->referenceName; |
| 3837 |
} |
| 3838 |
public function setStart($start) |
| 3839 |
{ |
| 3840 |
$this->start = $start; |
| 3841 |
} |
| 3842 |
public function getStart() |
| 3843 |
{ |
| 3844 |
return $this->start; |
| 3845 |
} |
| 3846 |
public function setVariantName($variantName) |
| 3847 |
{ |
| 3848 |
$this->variantName = $variantName; |
| 3849 |
} |
| 3850 |
public function getVariantName() |
| 3851 |
{ |
| 3852 |
return $this->variantName; |
| 3853 |
} |
| 3854 |
public function setVariantSetIds($variantSetIds) |
| 3855 |
{ |
| 3856 |
$this->variantSetIds = $variantSetIds; |
| 3857 |
} |
| 3858 |
public function getVariantSetIds() |
| 3859 |
{ |
| 3860 |
return $this->variantSetIds; |
| 3861 |
} |
| 3862 |
} |
| 3863 |
|
| 3864 |
class Google_Service_Genomics_SearchVariantsResponse extends Google_Collection |
| 3865 |
{ |
| 3866 |
protected $collection_key = 'variants'; |
| 3867 |
protected $internal_gapi_mappings = array( |
| 3868 |
); |
| 3869 |
public $nextPageToken; |
| 3870 |
protected $variantsType = 'Google_Service_Genomics_Variant'; |
| 3871 |
protected $variantsDataType = 'array'; |
| 3872 |
|
| 3873 |
|
| 3874 |
public function setNextPageToken($nextPageToken) |
| 3875 |
{ |
| 3876 |
$this->nextPageToken = $nextPageToken; |
| 3877 |
} |
| 3878 |
public function getNextPageToken() |
| 3879 |
{ |
| 3880 |
return $this->nextPageToken; |
| 3881 |
} |
| 3882 |
public function setVariants($variants) |
| 3883 |
{ |
| 3884 |
$this->variants = $variants; |
| 3885 |
} |
| 3886 |
public function getVariants() |
| 3887 |
{ |
| 3888 |
return $this->variants; |
| 3889 |
} |
| 3890 |
} |
| 3891 |
|
| 3892 |
class Google_Service_Genomics_SetIamPolicyRequest extends Google_Model |
| 3893 |
{ |
| 3894 |
protected $internal_gapi_mappings = array( |
| 3895 |
); |
| 3896 |
protected $policyType = 'Google_Service_Genomics_Policy'; |
| 3897 |
protected $policyDataType = ''; |
| 3898 |
|
| 3899 |
|
| 3900 |
public function setPolicy(Google_Service_Genomics_Policy $policy) |
| 3901 |
{ |
| 3902 |
$this->policy = $policy; |
| 3903 |
} |
| 3904 |
public function getPolicy() |
| 3905 |
{ |
| 3906 |
return $this->policy; |
| 3907 |
} |
| 3908 |
} |
| 3909 |
|
| 3910 |
class Google_Service_Genomics_Status extends Google_Collection |
| 3911 |
{ |
| 3912 |
protected $collection_key = 'details'; |
| 3913 |
protected $internal_gapi_mappings = array( |
| 3914 |
); |
| 3915 |
public $code; |
| 3916 |
public $details; |
| 3917 |
public $message; |
| 3918 |
|
| 3919 |
|
| 3920 |
public function setCode($code) |
| 3921 |
{ |
| 3922 |
$this->code = $code; |
| 3923 |
} |
| 3924 |
public function getCode() |
| 3925 |
{ |
| 3926 |
return $this->code; |
| 3927 |
} |
| 3928 |
public function setDetails($details) |
| 3929 |
{ |
| 3930 |
$this->details = $details; |
| 3931 |
} |
| 3932 |
public function getDetails() |
| 3933 |
{ |
| 3934 |
return $this->details; |
| 3935 |
} |
| 3936 |
public function setMessage($message) |
| 3937 |
{ |
| 3938 |
$this->message = $message; |
| 3939 |
} |
| 3940 |
public function getMessage() |
| 3941 |
{ |
| 3942 |
return $this->message; |
| 3943 |
} |
| 3944 |
} |
| 3945 |
|
| 3946 |
class Google_Service_Genomics_StreamReadsRequest extends Google_Model |
| 3947 |
{ |
| 3948 |
protected $internal_gapi_mappings = array( |
| 3949 |
); |
| 3950 |
public $end; |
| 3951 |
public $projectId; |
| 3952 |
public $readGroupSetId; |
| 3953 |
public $referenceName; |
| 3954 |
public $start; |
| 3955 |
|
| 3956 |
|
| 3957 |
public function setEnd($end) |
| 3958 |
{ |
| 3959 |
$this->end = $end; |
| 3960 |
} |
| 3961 |
public function getEnd() |
| 3962 |
{ |
| 3963 |
return $this->end; |
| 3964 |
} |
| 3965 |
public function setProjectId($projectId) |
| 3966 |
{ |
| 3967 |
$this->projectId = $projectId; |
| 3968 |
} |
| 3969 |
public function getProjectId() |
| 3970 |
{ |
| 3971 |
return $this->projectId; |
| 3972 |
} |
| 3973 |
public function setReadGroupSetId($readGroupSetId) |
| 3974 |
{ |
| 3975 |
$this->readGroupSetId = $readGroupSetId; |
| 3976 |
} |
| 3977 |
public function getReadGroupSetId() |
| 3978 |
{ |
| 3979 |
return $this->readGroupSetId; |
| 3980 |
} |
| 3981 |
public function setReferenceName($referenceName) |
| 3982 |
{ |
| 3983 |
$this->referenceName = $referenceName; |
| 3984 |
} |
| 3985 |
public function getReferenceName() |
| 3986 |
{ |
| 3987 |
return $this->referenceName; |
| 3988 |
} |
| 3989 |
public function setStart($start) |
| 3990 |
{ |
| 3991 |
$this->start = $start; |
| 3992 |
} |
| 3993 |
public function getStart() |
| 3994 |
{ |
| 3995 |
return $this->start; |
| 3996 |
} |
| 3997 |
} |
| 3998 |
|
| 3999 |
class Google_Service_Genomics_StreamReadsResponse extends Google_Collection |
| 4000 |
{ |
| 4001 |
protected $collection_key = 'alignments'; |
| 4002 |
protected $internal_gapi_mappings = array( |
| 4003 |
); |
| 4004 |
protected $alignmentsType = 'Google_Service_Genomics_Read'; |
| 4005 |
protected $alignmentsDataType = 'array'; |
| 4006 |
|
| 4007 |
|
| 4008 |
public function setAlignments($alignments) |
| 4009 |
{ |
| 4010 |
$this->alignments = $alignments; |
| 4011 |
} |
| 4012 |
public function getAlignments() |
| 4013 |
{ |
| 4014 |
return $this->alignments; |
| 4015 |
} |
| 4016 |
} |
| 4017 |
|
| 4018 |
class Google_Service_Genomics_StreamVariantsRequest extends Google_Collection |
| 4019 |
{ |
| 4020 |
protected $collection_key = 'callSetIds'; |
| 4021 |
protected $internal_gapi_mappings = array( |
| 4022 |
); |
| 4023 |
public $callSetIds; |
| 4024 |
public $end; |
| 4025 |
public $projectId; |
| 4026 |
public $referenceName; |
| 4027 |
public $start; |
| 4028 |
public $variantSetId; |
| 4029 |
|
| 4030 |
|
| 4031 |
public function setCallSetIds($callSetIds) |
| 4032 |
{ |
| 4033 |
$this->callSetIds = $callSetIds; |
| 4034 |
} |
| 4035 |
public function getCallSetIds() |
| 4036 |
{ |
| 4037 |
return $this->callSetIds; |
| 4038 |
} |
| 4039 |
public function setEnd($end) |
| 4040 |
{ |
| 4041 |
$this->end = $end; |
| 4042 |
} |
| 4043 |
public function getEnd() |
| 4044 |
{ |
| 4045 |
return $this->end; |
| 4046 |
} |
| 4047 |
public function setProjectId($projectId) |
| 4048 |
{ |
| 4049 |
$this->projectId = $projectId; |
| 4050 |
} |
| 4051 |
public function getProjectId() |
| 4052 |
{ |
| 4053 |
return $this->projectId; |
| 4054 |
} |
| 4055 |
public function setReferenceName($referenceName) |
| 4056 |
{ |
| 4057 |
$this->referenceName = $referenceName; |
| 4058 |
} |
| 4059 |
public function getReferenceName() |
| 4060 |
{ |
| 4061 |
return $this->referenceName; |
| 4062 |
} |
| 4063 |
public function setStart($start) |
| 4064 |
{ |
| 4065 |
$this->start = $start; |
| 4066 |
} |
| 4067 |
public function getStart() |
| 4068 |
{ |
| 4069 |
return $this->start; |
| 4070 |
} |
| 4071 |
public function setVariantSetId($variantSetId) |
| 4072 |
{ |
| 4073 |
$this->variantSetId = $variantSetId; |
| 4074 |
} |
| 4075 |
public function getVariantSetId() |
| 4076 |
{ |
| 4077 |
return $this->variantSetId; |
| 4078 |
} |
| 4079 |
} |
| 4080 |
|
| 4081 |
class Google_Service_Genomics_StreamVariantsResponse extends Google_Collection |
| 4082 |
{ |
| 4083 |
protected $collection_key = 'variants'; |
| 4084 |
protected $internal_gapi_mappings = array( |
| 4085 |
); |
| 4086 |
protected $variantsType = 'Google_Service_Genomics_Variant'; |
| 4087 |
protected $variantsDataType = 'array'; |
| 4088 |
|
| 4089 |
|
| 4090 |
public function setVariants($variants) |
| 4091 |
{ |
| 4092 |
$this->variants = $variants; |
| 4093 |
} |
| 4094 |
public function getVariants() |
| 4095 |
{ |
| 4096 |
return $this->variants; |
| 4097 |
} |
| 4098 |
} |
| 4099 |
|
| 4100 |
class Google_Service_Genomics_TestIamPermissionsRequest extends Google_Collection |
| 4101 |
{ |
| 4102 |
protected $collection_key = 'permissions'; |
| 4103 |
protected $internal_gapi_mappings = array( |
| 4104 |
); |
| 4105 |
public $permissions; |
| 4106 |
|
| 4107 |
|
| 4108 |
public function setPermissions($permissions) |
| 4109 |
{ |
| 4110 |
$this->permissions = $permissions; |
| 4111 |
} |
| 4112 |
public function getPermissions() |
| 4113 |
{ |
| 4114 |
return $this->permissions; |
| 4115 |
} |
| 4116 |
} |
| 4117 |
|
| 4118 |
class Google_Service_Genomics_TestIamPermissionsResponse extends Google_Collection |
| 4119 |
{ |
| 4120 |
protected $collection_key = 'permissions'; |
| 4121 |
protected $internal_gapi_mappings = array( |
| 4122 |
); |
| 4123 |
public $permissions; |
| 4124 |
|
| 4125 |
|
| 4126 |
public function setPermissions($permissions) |
| 4127 |
{ |
| 4128 |
$this->permissions = $permissions; |
| 4129 |
} |
| 4130 |
public function getPermissions() |
| 4131 |
{ |
| 4132 |
return $this->permissions; |
| 4133 |
} |
| 4134 |
} |
| 4135 |
|
| 4136 |
class Google_Service_Genomics_UndeleteDatasetRequest extends Google_Model |
| 4137 |
{ |
| 4138 |
} |
| 4139 |
|
| 4140 |
class Google_Service_Genomics_Variant extends Google_Collection |
| 4141 |
{ |
| 4142 |
protected $collection_key = 'names'; |
| 4143 |
protected $internal_gapi_mappings = array( |
| 4144 |
); |
| 4145 |
public $alternateBases; |
| 4146 |
protected $callsType = 'Google_Service_Genomics_VariantCall'; |
| 4147 |
protected $callsDataType = 'array'; |
| 4148 |
public $created; |
| 4149 |
public $end; |
| 4150 |
public $filter; |
| 4151 |
public $id; |
| 4152 |
public $info; |
| 4153 |
public $names; |
| 4154 |
public $quality; |
| 4155 |
public $referenceBases; |
| 4156 |
public $referenceName; |
| 4157 |
public $start; |
| 4158 |
public $variantSetId; |
| 4159 |
|
| 4160 |
|
| 4161 |
public function setAlternateBases($alternateBases) |
| 4162 |
{ |
| 4163 |
$this->alternateBases = $alternateBases; |
| 4164 |
} |
| 4165 |
public function getAlternateBases() |
| 4166 |
{ |
| 4167 |
return $this->alternateBases; |
| 4168 |
} |
| 4169 |
public function setCalls($calls) |
| 4170 |
{ |
| 4171 |
$this->calls = $calls; |
| 4172 |
} |
| 4173 |
public function getCalls() |
| 4174 |
{ |
| 4175 |
return $this->calls; |
| 4176 |
} |
| 4177 |
public function setCreated($created) |
| 4178 |
{ |
| 4179 |
$this->created = $created; |
| 4180 |
} |
| 4181 |
public function getCreated() |
| 4182 |
{ |
| 4183 |
return $this->created; |
| 4184 |
} |
| 4185 |
public function setEnd($end) |
| 4186 |
{ |
| 4187 |
$this->end = $end; |
| 4188 |
} |
| 4189 |
public function getEnd() |
| 4190 |
{ |
| 4191 |
return $this->end; |
| 4192 |
} |
| 4193 |
public function setFilter($filter) |
| 4194 |
{ |
| 4195 |
$this->filter = $filter; |
| 4196 |
} |
| 4197 |
public function getFilter() |
| 4198 |
{ |
| 4199 |
return $this->filter; |
| 4200 |
} |
| 4201 |
public function setId($id) |
| 4202 |
{ |
| 4203 |
$this->id = $id; |
| 4204 |
} |
| 4205 |
public function getId() |
| 4206 |
{ |
| 4207 |
return $this->id; |
| 4208 |
} |
| 4209 |
public function setInfo($info) |
| 4210 |
{ |
| 4211 |
$this->info = $info; |
| 4212 |
} |
| 4213 |
public function getInfo() |
| 4214 |
{ |
| 4215 |
return $this->info; |
| 4216 |
} |
| 4217 |
public function setNames($names) |
| 4218 |
{ |
| 4219 |
$this->names = $names; |
| 4220 |
} |
| 4221 |
public function getNames() |
| 4222 |
{ |
| 4223 |
return $this->names; |
| 4224 |
} |
| 4225 |
public function setQuality($quality) |
| 4226 |
{ |
| 4227 |
$this->quality = $quality; |
| 4228 |
} |
| 4229 |
public function getQuality() |
| 4230 |
{ |
| 4231 |
return $this->quality; |
| 4232 |
} |
| 4233 |
public function setReferenceBases($referenceBases) |
| 4234 |
{ |
| 4235 |
$this->referenceBases = $referenceBases; |
| 4236 |
} |
| 4237 |
public function getReferenceBases() |
| 4238 |
{ |
| 4239 |
return $this->referenceBases; |
| 4240 |
} |
| 4241 |
public function setReferenceName($referenceName) |
| 4242 |
{ |
| 4243 |
$this->referenceName = $referenceName; |
| 4244 |
} |
| 4245 |
public function getReferenceName() |
| 4246 |
{ |
| 4247 |
return $this->referenceName; |
| 4248 |
} |
| 4249 |
public function setStart($start) |
| 4250 |
{ |
| 4251 |
$this->start = $start; |
| 4252 |
} |
| 4253 |
public function getStart() |
| 4254 |
{ |
| 4255 |
return $this->start; |
| 4256 |
} |
| 4257 |
public function setVariantSetId($variantSetId) |
| 4258 |
{ |
| 4259 |
$this->variantSetId = $variantSetId; |
| 4260 |
} |
| 4261 |
public function getVariantSetId() |
| 4262 |
{ |
| 4263 |
return $this->variantSetId; |
| 4264 |
} |
| 4265 |
} |
| 4266 |
|
| 4267 |
class Google_Service_Genomics_VariantCall extends Google_Collection |
| 4268 |
{ |
| 4269 |
protected $collection_key = 'genotypeLikelihood'; |
| 4270 |
protected $internal_gapi_mappings = array( |
| 4271 |
); |
| 4272 |
public $callSetId; |
| 4273 |
public $callSetName; |
| 4274 |
public $genotype; |
| 4275 |
public $genotypeLikelihood; |
| 4276 |
public $info; |
| 4277 |
public $phaseset; |
| 4278 |
|
| 4279 |
|
| 4280 |
public function setCallSetId($callSetId) |
| 4281 |
{ |
| 4282 |
$this->callSetId = $callSetId; |
| 4283 |
} |
| 4284 |
public function getCallSetId() |
| 4285 |
{ |
| 4286 |
return $this->callSetId; |
| 4287 |
} |
| 4288 |
public function setCallSetName($callSetName) |
| 4289 |
{ |
| 4290 |
$this->callSetName = $callSetName; |
| 4291 |
} |
| 4292 |
public function getCallSetName() |
| 4293 |
{ |
| 4294 |
return $this->callSetName; |
| 4295 |
} |
| 4296 |
public function setGenotype($genotype) |
| 4297 |
{ |
| 4298 |
$this->genotype = $genotype; |
| 4299 |
} |
| 4300 |
public function getGenotype() |
| 4301 |
{ |
| 4302 |
return $this->genotype; |
| 4303 |
} |
| 4304 |
public function setGenotypeLikelihood($genotypeLikelihood) |
| 4305 |
{ |
| 4306 |
$this->genotypeLikelihood = $genotypeLikelihood; |
| 4307 |
} |
| 4308 |
public function getGenotypeLikelihood() |
| 4309 |
{ |
| 4310 |
return $this->genotypeLikelihood; |
| 4311 |
} |
| 4312 |
public function setInfo($info) |
| 4313 |
{ |
| 4314 |
$this->info = $info; |
| 4315 |
} |
| 4316 |
public function getInfo() |
| 4317 |
{ |
| 4318 |
return $this->info; |
| 4319 |
} |
| 4320 |
public function setPhaseset($phaseset) |
| 4321 |
{ |
| 4322 |
$this->phaseset = $phaseset; |
| 4323 |
} |
| 4324 |
public function getPhaseset() |
| 4325 |
{ |
| 4326 |
return $this->phaseset; |
| 4327 |
} |
| 4328 |
} |
| 4329 |
|
| 4330 |
class Google_Service_Genomics_VariantSet extends Google_Collection |
| 4331 |
{ |
| 4332 |
protected $collection_key = 'referenceBounds'; |
| 4333 |
protected $internal_gapi_mappings = array( |
| 4334 |
); |
| 4335 |
public $datasetId; |
| 4336 |
public $id; |
| 4337 |
protected $metadataType = 'Google_Service_Genomics_VariantSetMetadata'; |
| 4338 |
protected $metadataDataType = 'array'; |
| 4339 |
protected $referenceBoundsType = 'Google_Service_Genomics_ReferenceBound'; |
| 4340 |
protected $referenceBoundsDataType = 'array'; |
| 4341 |
public $referenceSetId; |
| 4342 |
|
| 4343 |
|
| 4344 |
public function setDatasetId($datasetId) |
| 4345 |
{ |
| 4346 |
$this->datasetId = $datasetId; |
| 4347 |
} |
| 4348 |
public function getDatasetId() |
| 4349 |
{ |
| 4350 |
return $this->datasetId; |
| 4351 |
} |
| 4352 |
public function setId($id) |
| 4353 |
{ |
| 4354 |
$this->id = $id; |
| 4355 |
} |
| 4356 |
public function getId() |
| 4357 |
{ |
| 4358 |
return $this->id; |
| 4359 |
} |
| 4360 |
public function setMetadata($metadata) |
| 4361 |
{ |
| 4362 |
$this->metadata = $metadata; |
| 4363 |
} |
| 4364 |
public function getMetadata() |
| 4365 |
{ |
| 4366 |
return $this->metadata; |
| 4367 |
} |
| 4368 |
public function setReferenceBounds($referenceBounds) |
| 4369 |
{ |
| 4370 |
$this->referenceBounds = $referenceBounds; |
| 4371 |
} |
| 4372 |
public function getReferenceBounds() |
| 4373 |
{ |
| 4374 |
return $this->referenceBounds; |
| 4375 |
} |
| 4376 |
public function setReferenceSetId($referenceSetId) |
| 4377 |
{ |
| 4378 |
$this->referenceSetId = $referenceSetId; |
| 4379 |
} |
| 4380 |
public function getReferenceSetId() |
| 4381 |
{ |
| 4382 |
return $this->referenceSetId; |
| 4383 |
} |
| 4384 |
} |
| 4385 |
|
| 4386 |
class Google_Service_Genomics_VariantSetMetadata extends Google_Model |
| 4387 |
{ |
| 4388 |
protected $internal_gapi_mappings = array( |
| 4389 |
); |
| 4390 |
public $description; |
| 4391 |
public $id; |
| 4392 |
public $info; |
| 4393 |
public $key; |
| 4394 |
public $number; |
| 4395 |
public $type; |
| 4396 |
public $value; |
| 4397 |
|
| 4398 |
|
| 4399 |
public function setDescription($description) |
| 4400 |
{ |
| 4401 |
$this->description = $description; |
| 4402 |
} |
| 4403 |
public function getDescription() |
| 4404 |
{ |
| 4405 |
return $this->description; |
| 4406 |
} |
| 4407 |
public function setId($id) |
| 4408 |
{ |
| 4409 |
$this->id = $id; |
| 4410 |
} |
| 4411 |
public function getId() |
| 4412 |
{ |
| 4413 |
return $this->id; |
| 4414 |
} |
| 4415 |
public function setInfo($info) |
| 4416 |
{ |
| 4417 |
$this->info = $info; |
| 4418 |
} |
| 4419 |
public function getInfo() |
| 4420 |
{ |
| 4421 |
return $this->info; |
| 4422 |
} |
| 4423 |
public function setKey($key) |
| 4424 |
{ |
| 4425 |
$this->key = $key; |
| 4426 |
} |
| 4427 |
public function getKey() |
| 4428 |
{ |
| 4429 |
return $this->key; |
| 4430 |
} |
| 4431 |
public function setNumber($number) |
| 4432 |
{ |
| 4433 |
$this->number = $number; |
| 4434 |
} |
| 4435 |
public function getNumber() |
| 4436 |
{ |
| 4437 |
return $this->number; |
| 4438 |
} |
| 4439 |
public function setType($type) |
| 4440 |
{ |
| 4441 |
$this->type = $type; |
| 4442 |
} |
| 4443 |
public function getType() |
| 4444 |
{ |
| 4445 |
return $this->type; |
| 4446 |
} |
| 4447 |
public function setValue($value) |
| 4448 |
{ |
| 4449 |
$this->value = $value; |
| 4450 |
} |
| 4451 |
public function getValue() |
| 4452 |
{ |
| 4453 |
return $this->value; |
| 4454 |
} |
| 4455 |
} |
| 4456 |
|
